Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13290 539 / 0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) AT3G27540 459 / 6e-162 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G12990 447 / 2e-157 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT5G14480 447 / 3e-157 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT1G67880 443 / 6e-156 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G01620 413 / 6e-144 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) AT3G26445 79 / 8e-18 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019400 [exp] 744 / 0 AT2G13290 538 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10038093 [exp] 674 / 0 AT2G13290 533 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Lus10006474 [exp] 441 / 7e-155 AT1G12990 657 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10006475 [exp] 441 / 2e-154 AT1G12990 654 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10035231 [exp] 437 / 3e-153 AT3G27540 672 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10032088 [exp] 436 / 4e-153 AT3G27540 676 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10003666 [exp] 432 / 2e-151 AT3G27540 670 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Lus10022281 [exp] 431 / 4e-151 AT3G27540 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066700 [exp] 587 / 0 AT2G13290 526 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Potri.018G127900 [exp] 578 / 0 AT2G13290 530 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G343600 [exp] 454 / 3e-160 AT3G27540 627 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.008G186000 [exp] 441 / 5e-155 AT1G12990 691 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1) Potri.010G046900 [exp] 439 / 3e-154 AT1G12990 675 / 0.0 beta-1,4-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04724 [flax] [poplar] Glyco_transf_17 Glycosyltransferase family 17
Representative CDS sequence Show only first row Show all	>Lus10043257 pacid=23168117 polypeptide=Lus10043257 locus=Lus10043257.g ID=Lus10043257.BGIv1.0 annot-version=v1.0 ATGGCACCACGATCTGTACGCACCTCCACGAAAAGGCTACCACGGAAGCTTGCATTCATGATATTCTTGATACTAGTCCCCATCTGTGTCATCGGAATCG TCACTCATTTCCATACAATCTCGTATCTTTTCCGACCGCTTTGGGACAGTCCTCCTCGTCCATTCCAAAAGATACCTCACTACTACGCAGAGAAAGTGCC AATGGAACACCTCTGCAGCCTCCACGGCTGGAGCATTCGCAGGGAGCCTCGTCGTGTCTTTGATGGCATCATCTTCAGCAACGAGCTGGACCTTCTCGAG ATAAGATGGCGCGAGCTTCATCGTTACGTCACCAAGTTTGTGATCCTCGAGTCCAACACCACCTTCACAGGGATACCAAAGCCTCTCTTCTTCGACTCAA ACAGGCACCGGTTCGACTTTGCAGCAGACAAGGTGGTCCACGGTATATTCTCGGGTCGAATGGCTGAACCTGGATCCCAGGAAGACCCCTTTGTGCTCGA GTCGGAGCAGCGAGCGTCCATGAACGGTTTGCTTCGCCGTGCAGGAGTTTCCAACGGGGACTTAGTCATCATGTCGGATACAGACGAGATTCCAAGCCCT CATACTGTGAAACTGCTACAGTGGTGCGATGGAATACCACCCGTGTTACATCTCGAGATGAGGAACTACTTATACTCGTTTGAATTCCCCGTAGATAGCA GCCACTGGAGGGCCACGGTGCAGACTTATAGCCCTTGGACAAGATACAGGCACTCGCGGCAATCAGATGTTATACTATCGGACGCTGGATGGCACTGCAG CTTCTGCTTTCGGAAGCTTGAGGAGTTTGTGTTCAAGATGAAGGCGTACAGCCACGCTGACCGGGTAAGGAGACAGGATTTTCTTAACCACCAGAGGATT CAGAAACTGATATGCAAAGGGGACGATTTGTTTGACATGCTACCTGAAGAGTACACATTTAAAGAGCTGATTAAGAAGATGGGGTCAATCCCACATTCAG CTTCTGGGGTTCACCTTCCTGCTTATTTGATAGAGAATGCAGAGACGTTTAGGTTTCTTCTTCCTGGAGGGTGTCTAAGAACAAAGTATGCTGCTTGA
AA sequence Show only first row Show all	>Lus10043257 pacid=23168117 polypeptide=Lus10043257 locus=Lus10043257.g ID=Lus10043257.BGIv1.0 annot-version=v1.0 MAPRSVRTSTKRLPRKLAFMIFLILVPICVIGIVTHFHTISYLFRPLWDSPPRPFQKIPHYYAEKVPMEHLCSLHGWSIRREPRRVFDGIIFSNELDLLE IRWRELHRYVTKFVILESNTTFTGIPKPLFFDSNRHRFDFAADKVVHGIFSGRMAEPGSQEDPFVLESEQRASMNGLLRRAGVSNGDLVIMSDTDEIPSP HTVKLLQWCDGIPPVLHLEMRNYLYSFEFPVDSSHWRATVQTYSPWTRYRHSRQSDVILSDAGWHCSFCFRKLEEFVFKMKAYSHADRVRRQDFLNHQRI QKLICKGDDLFDMLPEEYTFKELIKKMGSIPHSASGVHLPAYLIENAETFRFLLPGGCLRTKYAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10043257 [exp]	0	1
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10042283 [exp]	7.7	0.8914
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10014889 [exp]	13.3	0.8417
AT3G61920			unknown protein		Lus10032411 [exp]	18.7	0.8905
AT5G36930			Disease resistance protein (TI...		Lus10035674 [exp]	19.8	0.8124
AT1G36280			L-Aspartase-like family protei...		Lus10028260 [exp]	25.6	0.8809
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Lus10035136 [exp]	32.2	0.8707
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10001002 [exp]	43.3	0.8092
AT3G19990			unknown protein		Lus10028681 [exp]	44.0	0.8783
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10041930 [exp]	55.7	0.8535
AT5G60520			Late embryogenesis abundant (L...		Lus10015148 [exp]	56.0	0.8629

Compare expression of checked genes

Lus10043257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.