Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15880 1611 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT1G15750 1565 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT1G80490 1560 / 0 TPR1 TOPLESS-related 1 (.1.2) AT3G16830 1311 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 1284 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 245 / 2e-68 transducin family protein / WD-40 repeat family protein (.1) AT2G43770 55 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 54 / 7e-07 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 53 / 8e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 53 / 1e-06 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019401 [exp] 1870 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011481 [exp] 1600 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10023119 [exp] 1555 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10020668 [exp] 1326 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10029876 [exp] 1323 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10006650 [exp] 1154 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 1028 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10038094 [exp] 1018 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10001951 [exp] 684 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G128000 [exp] 1815 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G066800 [exp] 1804 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.003G030000 [exp] 1593 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1550 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.013G081300 [exp] 1397 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.005G021700 [exp] 1353 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 1333 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.006G257900 [exp] 1284 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023900 [exp] 1276 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023800 [exp] 845 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10043258 pacid=23167903 polypeptide=Lus10043258 locus=Lus10043258.g ID=Lus10043258.BGIv1.0 annot-version=v1.0 ATGTCTTCTCTCAGTAGGGAGCTTGTGTTCCTCATACTCCAGTTCCTGGACGAGGAAAAATTCAAGGAGACCGTGCACAAATTGGAGCAGGAGTCTGGGT TTTATTTCAACATGCGGTATTTCGAGGAAATGGTGACAAATGGAGAGTGGGATGAGGTGGAGAAGTATTTATCAGGATTCACCAAGGTTGATGATAATAG ATATTCCATGAAGATTTTCTTCGAGATCCGGAAGCAGAAGTATCTCGAGGCTTTAGATAAGCGGGATCGTGCCAAGGCAGTGGAAATTTTGGTGAAGGAC TTGAAAGTGTTTGCAGCATTTAATGAAGAGCTATTTAAGGAAATTACACAGCTGTTGACATTGGAAAACTTCAGAGAAAACGAACAGTTGTCCAAGTACG GAGATACTAAATCTGCTAGGAACATAATGCTTGGTGAACTGAAGAAGCTGATAGAAGCTAACCCTTTGTTTCGGGATAAACTTCAGTTTCCTACATTGAA GAATTCAAGATTGCGAACCCTAATCAATCAAAGTTTAAATTGGCAACATCAGCTGTGTAAGAATCCTAGGCCTAATCCTGATATAAAGACCTTGTTCGTG GACCACAGCTGCGGTGGGCAGCCAAATGGTGCTCGAGCCCCATCGCCTGTCACCAATACCTTAATGGGTGGTATGCCAAAGCCAGGCGGCTTCCCTCCGC TTGGTGCTCATGGTCCATTCCAACCTGCGCCTGCTACTCTACCAACATCTCTTGCTGGTTGGATGGCGAATCCATCCCCTGCCGCTCATCCATCAGCTTC TGCTGGACCCATTGGCCTGGCTGCTCCTAATAGTACAGCAGCTTTATTGAAGCGTCCCAGGACCCCTCCTACAAACAATCCGGCTATGGATTATCAGACG GCAGACTCTGAGCTTGTTATGAAAAGACCACGGCCTTTTGGAATGTCTGAAGAGGTTAATAATCTTCCTGTAAACATTCTGCCTGTTGGATATGCCAGCC ACAGCCATGGACAGAGTTCCTACTCATCTGATGATCTTCCAAAAAATGTTGTTATGGCCTTGAATCAAGGCTCAGCAGTGAAGAGTATGGATTTTCATCC ATTGCAGCAGATTTTACTTCTTGTTGGAACAAACATGGGTGATGTCATGGTATGGGAGCTGGGTAGCCGAGAAAGAATTGTTTTAAAGAATTTCAAGGTT TGGGACCTTGGAGCTTGTTCGATGGGATTGCAGGCATCTCTTGCCAATGATTATACAGCATCGGTGAACCGTGTCATGTGGAGTCCTGATGGAACTCTAT TTGGTGTTGCTTACTCTAAACACATTGTACACATCTATTCATACCATGGCGGTGATGATATAAGGAACCACCTTGAGATTGAGGCCCATGTTGGAAGTGT TAATGACCTCGCTTTCTCCTATCCCAACAAGCAACTGTGTGTAGTTACTTGCGGCGAAGACAGGGTGATTAAGGTGTGGGATGCAGTTACTGGCAATAAG CAGTTTACGTTTGAAGGTCATGAAGCACCTGTATATTCTGTGTGCCCACACCACAAAGAAAGTATTCAGTTTATATTCTCAACTGCAACTGATGGAAAGA TTAAAGCATGGTTGTATGATACCATGGGGTCAAGAGTTGATTATGATGCTCCAGGACATTCATCAACCACAATGGCATATAGTGCTGATGGAACAAGATT GTTCTCATGTGGGACAAACAAGGAGGGGGAATCACATTTGGTTGAATGGAATGAAAGTGAAGGTGCAGTAAAGCGCAGGTATAGTGGTCTTGGGAAGCGA TCAGTTGGAGTGGTACAATTCGATACCACCAAGAATCGGTTCTTGGCTGCTGGTGATGAGTTCACTGTGAAATTCTGGGACATGGATAATGTTAGCACAG TAACCAGTATAGATGCAGATGGAGGACTGCCGGCTTCTCCTTGTATAAGATTCAATAAAGAAGGAATTCTCCTAGCTGTCTCAACCAGTGACAATAGTGT TAAAATTCTAGCGAATCCTGATGGAATTAGGTTGTTAAAGACTGTTGAGAATCGCACTTTTGATGCTTCCAGAGCTGCTTCTGCAGCTATTGTGAAGGCG CCTGCAATGCCAAATTTTGCTGCGGCCAATCCTAATCCAGGAATTAGCATGGGAAATCCAGCTGCTCCTGTGCCACCTCCTATGGTTGGGATGATTAGCG ATAGTCGTTCTTTGGCTGATGTTAAACCTAGAATTGTTGATGAACCGGTGGAGAAGTCAAGGATCTGGAAGGCTGCCGAAATAAACGAACCAACTCACTG CCGTTCTCTTAGGCTTCCTGATAGTTTGACTGCAATGAGGGTATCCAGATTGATGTATACAAATTCAGGAATGGCCATATTGGCATTATCTTCCAATGCT GTTCATAAGCTATGGAAATGGCAGAGAAATGAGAGAAATGCAACGGGGAAGGCTACTGCTAGCCTTGCACCACAATTATGGCAACCATCAAGTGGAATAT TGATGACCAATGATATAAGTGATACAAATCCTGAAGATGCTGTCCCATGCTTCGCTCTATCAAAGAATGATTCTTACGTTATGTCAGCATCAGGAGGAAA GATTTCTCTGTTCAACATGATGACATTCAAGACAATGACAACGTTCATGCCCCCACCACCAGCCGCAACTTTCCTGGCGTTTCATCCTCAAGACAATAAC ATAATTGCTATCGGGATGGAGGATTCGACAATTCAGATATATAATGTCAGGGTTGATGAGGTTAAGACTAAGTTGCAAGGTCATCAGAAAAGAATCACTG GCCTTGCCTTCTCTAACACTCTAAATGTGCTAGTATCTTCTGGAGCCGATTCTCAGCTGTGCGTGTGGAATACAGATGGGTGGGGAAAGCAGGCTAGTAA AACCTTGCAGATCCCTCCTGGACGCCCAACTTCTCCACTTTCGGATACCCGTGTCCAGTTTCATATTGACCAGACTCATCTGCTTGCAATTCATGAATCA CAGATTGCACTCTACGAAGCACCAAAGCTGGAATGTCTGAAGCAATGGTTCCCTCGAGATGTAAATCCCATCACACATGCTACGTATTCATGTGATAGCC AGTCGATATACGTTAGCTTTGAAGATGGAAGTGTGGGCGTTCTTTCGGCTCCTTCCCTGAGACTGAGATGTAGAATAGCTTCTCCAGCATATTTACCTCC CAATCCAAGCTTAAGGGTGTATCCTTTAGTCATCGCTGCCCATCCATCGGAACCAAACCAGTTTGCGTTGGGACTAACAGACGGTGGAGTTCATGTCCTA GAGCCACTAGAGTCAGAAGGCAAATGGGGCACTGCACCTCCAGCCGAAAATGGGGCTGGACCTAGCACTTCAGGTGCTGCGGCTGCTGCAGGTTCGGAAC AAGCTCAAAGATGA
AA sequence Show only first row Show all	>Lus10043258 pacid=23167903 polypeptide=Lus10043258 locus=Lus10043258.g ID=Lus10043258.BGIv1.0 annot-version=v1.0 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMRYFEEMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKD LKVFAAFNEELFKEITQLLTLENFRENEQLSKYGDTKSARNIMLGELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFV DHSCGGQPNGARAPSPVTNTLMGGMPKPGGFPPLGAHGPFQPAPATLPTSLAGWMANPSPAAHPSASAGPIGLAAPNSTAALLKRPRTPPTNNPAMDYQT ADSELVMKRPRPFGMSEEVNNLPVNILPVGYASHSHGQSSYSSDDLPKNVVMALNQGSAVKSMDFHPLQQILLLVGTNMGDVMVWELGSRERIVLKNFKV WDLGACSMGLQASLANDYTASVNRVMWSPDGTLFGVAYSKHIVHIYSYHGGDDIRNHLEIEAHVGSVNDLAFSYPNKQLCVVTCGEDRVIKVWDAVTGNK QFTFEGHEAPVYSVCPHHKESIQFIFSTATDGKIKAWLYDTMGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGESHLVEWNESEGAVKRRYSGLGKR SVGVVQFDTTKNRFLAAGDEFTVKFWDMDNVSTVTSIDADGGLPASPCIRFNKEGILLAVSTSDNSVKILANPDGIRLLKTVENRTFDASRAASAAIVKA PAMPNFAAANPNPGISMGNPAAPVPPPMVGMISDSRSLADVKPRIVDEPVEKSRIWKAAEINEPTHCRSLRLPDSLTAMRVSRLMYTNSGMAILALSSNA VHKLWKWQRNERNATGKATASLAPQLWQPSSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN IIAIGMEDSTIQIYNVRVDEVKTKLQGHQKRITGLAFSNTLNVLVSSGADSQLCVWNTDGWGKQASKTLQIPPGRPTSPLSDTRVQFHIDQTHLLAIHES QIALYEAPKLECLKQWFPRDVNPITHATYSCDSQSIYVSFEDGSVGVLSAPSLRLRCRIASPAYLPPNPSLRVYPLVIAAHPSEPNQFALGLTDGGVHVL EPLESEGKWGTAPPAENGAGPSTSGAAAAAGSEQAQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10043258 [exp]	0	1
AT3G45190			SIT4 phosphatase-associated fa...		Lus10016088 [exp]	3.6	0.9156
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	3.9	0.9137
AT4G16180			unknown protein		Lus10017062 [exp]	5.7	0.9153
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10027760 [exp]	6.7	0.8990
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	8.1	0.9036
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	8.5	0.9023
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	8.9	0.8987
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	9.2	0.8916
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	10.8	0.9052
AT3G07660			Kinase-related protein of unkn...		Lus10041089 [exp]	11.0	0.9007

Compare expression of checked genes

Lus10043258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.