Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25430 498 / 4e-170 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 496 / 1e-169 ENTH/ANTH/VHS superfamily protein (.1.2) AT1G03050 337 / 4e-108 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 326 / 5e-104 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 206 / 2e-58 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 174 / 1e-46 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 152 / 1e-39 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 147 / 1e-37 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 146 / 2e-37 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 137 / 2e-34 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019402 [exp] 993 / 0 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10001502 [exp] 522 / 1e-179 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10002920 [exp] 520 / 9e-179 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10012686 [exp] 241 / 2e-71 AT1G03050 642 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10020824 [exp] 230 / 2e-67 AT1G03050 636 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 226 / 6e-65 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10029998 [exp] 209 / 9e-58 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 186 / 3e-51 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 179 / 6e-48 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066900 [exp] 551 / 0 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.018G128200 [exp] 543 / 0 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.006G255000 [exp] 536 / 0 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.018G026900 [exp] 532 / 0 AT2G25430 857 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.006G118100 [exp] 353 / 1e-114 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 211 / 3e-60 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 209 / 8e-60 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 180 / 2e-49 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 180 / 2e-49 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 149 / 1e-38 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10043260 pacid=23168316 polypeptide=Lus10043260 locus=Lus10043260.g ID=Lus10043260.BGIv1.0 annot-version=v1.0 ATGGCGCCGAGCACGATCAGAAAGGCAATCGGAGCGGTGAAGGACCAGACGAGTATAAGCCTGGCGAAGGTGGCCGGAGCCTGTATCGCCACTGTCTCCA AGCGGCTGAGCAAGACTCACGACTGGATCGTCGCTCTCAAGTCCCTGATGCTGGTCCACCGCCTGCTGGCCGACGGCCACTCTTCCTTCGAGGACGAGAT CTTGCACGCAATGCGGAGCGGGATGAGAGTCCTTAACATGTCCGATTTCAGGGCCGAAGCCAGCTCCAATTCCTGGGATCACGCAGGCTTCGTCAGGTTA TACGCCATGTATTTGGAAGAGATGGTGCGGTGCTCTTCGTTTGAGAAGAAATGGTCAGGTAATCAAGGAGATAATAACGAAAGGAATGATCATCGGAAGG TGTTTGGTGAGAGGGACGATGGATTCGATCAGAAATGGAGGAGATTCGATGAGAGGGATGGTGAATTTGGTAGAAGAGAGACTGCTAGGGTTCATGAGGA CGATGATTCAGGTTCCACGAATTCGAATCTAAAGGAGATTGGGACAGAGGCTGTGATGGGAAAATCGAAGCAATTGCTCAAGATTCTTCACAGGGTTTTG GCATGTAGACCGGCAGGGATGGCGAGGAGTAATAGACTGGTGCTGGTGGCATTTCAGCAGGTGGTGAAGGAGAGCTTTGTGCTGTATGTTGAGATATGCG AGACATTAGGCATTTTGCTGGATCGATTCACCGAGATGGGGTATGAGAATTGTGTCAAGACATTCGACATTCATGTCAGTGCAGGGAAGATGATCGATGA GCTCATTGCGTTCTATGGTTGGTGTAAGGATATAGGGATTGCCAGATCTTCTGAGTATCCTGATGTGCAGAAGGTCACTGACAAACTGCTTGGAAATTTA CAAGGGTTTTTGAGAGACATGGCGACTACAAGGCCGCCTAAGAGTCCAGAGAGAAGTAAAGAGGAGGTGAAGATAATCATCCCAGTTGAAGAACCATACA TGAATGAGATAAAGGCTCTTCCTCCTCCTCAGAACTATATTACCCCAAAACCTGAACCATTATTGCAGAAGCCTGAGCCACCGAAGGTGACAGTGACACA AGATTTGGTGAACTTGAGAGATGATGGTGTTACAGCTGACGGAGAGGGAAACAAATTAGCACTGTCACTGTTCTCCCAGGCTATAAATGGTGATGGTTCA TGGGAAAAATTCCCAGGAGAGGAAGAAGTGGTGACTTCGGCATGGCAGAACCCGGCTGCCGAGATGGGGAAAGCAGATTGGGAACTTGCACTTGTGGAGA CGGGGAGTATTTTATCAAAGCAGAAGGCAACAATGGGCGGGGGATTGGATTCGCTGATTCTGAACGGAATGTACGACCAGGGAGCAGTGAATCAGCATTC AAACGCTTCCCAGATGAGCAAAGGAAGTGGTAGCAGTGTGGCACTGCGTATTAATAATGGGACGACGCAGCAAGTGCTGGCATTGCCTGCTCCAGATGGA ACGATGACGGCGGTGGGGAACCAGGACCCTTTTGCTGCGTCGGCGGGGGTTCCTCCTCCGTCGTACGTGCAAATAGCAGAGATGGAGATGAAGCAGCAGC TGTTTATACAGGAACAGCATGCCTGGCAACACTATAATCCTCAGCAGAGTATGATGATGATGCCGCAGCCTCCTCCGCCGGTTTATGGAATGCAGCAGCA GCCGGGAGGGTTTTATCAAACGGGGCCGTATAATTAA
AA sequence Show only first row Show all	>Lus10043260 pacid=23168316 polypeptide=Lus10043260 locus=Lus10043260.g ID=Lus10043260.BGIv1.0 annot-version=v1.0 MAPSTIRKAIGAVKDQTSISLAKVAGACIATVSKRLSKTHDWIVALKSLMLVHRLLADGHSSFEDEILHAMRSGMRVLNMSDFRAEASSNSWDHAGFVRL YAMYLEEMVRCSSFEKKWSGNQGDNNERNDHRKVFGERDDGFDQKWRRFDERDGEFGRRETARVHEDDDSGSTNSNLKEIGTEAVMGKSKQLLKILHRVL ACRPAGMARSNRLVLVAFQQVVKESFVLYVEICETLGILLDRFTEMGYENCVKTFDIHVSAGKMIDELIAFYGWCKDIGIARSSEYPDVQKVTDKLLGNL QGFLRDMATTRPPKSPERSKEEVKIIIPVEEPYMNEIKALPPPQNYITPKPEPLLQKPEPPKVTVTQDLVNLRDDGVTADGEGNKLALSLFSQAINGDGS WEKFPGEEEVVTSAWQNPAAEMGKADWELALVETGSILSKQKATMGGGLDSLILNGMYDQGAVNQHSNASQMSKGSGSSVALRINNGTTQQVLALPAPDG TMTAVGNQDPFAASAGVPPPSYVQIAEMEMKQQLFIQEQHAWQHYNPQQSMMMMPQPPPPVYGMQQQPGGFYQTGPYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Lus10043260 [exp]	0	1
AT2G33500	CO	COL14	B-box type zinc finger protein...		Lus10041526 [exp]	1.4	0.8290
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	3.0	0.8376
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10036899 [exp]	4.9	0.8008
					Lus10005785 [exp]	5.3	0.8162
					Lus10039851 [exp]	6.5	0.7967
AT1G45063			copper ion binding;electron ca...		Lus10019405 [exp]	7.4	0.8032
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	9.2	0.8094
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10022281 [exp]	12.1	0.8220
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10008702 [exp]	13.7	0.8053
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10022848 [exp]	17.3	0.7858

Compare expression of checked genes

Lus10043260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.