Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G33530 1536 / 0 Transducin family protein / WD-40 repeat family protein (.1.2.3) AT2G26610 1423 / 0 Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019403 [exp] 2211 / 0 AT3G33530 1732 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10038096 [exp] 1905 / 0 AT3G33530 1721 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10006655 [exp] 1014 / 0 AT2G26610 1476 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G128400 [exp] 1667 / 0 AT3G33530 1613 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043261 pacid=23167972 polypeptide=Lus10043261 locus=Lus10043261.g ID=Lus10043261.BGIv1.0 annot-version=v1.0 ATGTCTCCCGCTGCAACGCCGCCAGCGGACACCTCCCCGTGGGAATGCATGCTCCCTGGTCCTCCTTCCCGTAACAATTTCGGGTCCGTCGACATTTCTG CCTCCGGCCTCCTCGCTTTCCCTTCCGGATCTTCAGTCTCAGTCGTCGACTCCCGCTCCCTCCAGCACATCGCCACCATACCTCTCCCTGCTCCTACTTC CTCTTCCTCCTCTTCCGCATCCACCGCTCTCTCTCCTTTCGTCACCTCCGTCCGCTGGACTCCCCTCCCCTTACGCCGCGACCTCCTCGTCACGGAGCCT TCCTCCTCCCACCTGATCCTTGCTGCCGGAGACCGCCATGGCCGGATCGCCCTCGTCGATTTCCGCCATAGGTCGATCCTGCTCTGGCTGGAATCCGATT CGAGCTCCAAGTGTGGAATTCAGGATCTCTGCTGGATCCTGTGTAAGCCGGACTCTTACATTCTCGCTGCCCTCTCTGGTCCTTCGACTCTCTCACTCTA CAACACCGCGTCTGGATACTGCTTCTTCAAGTACGACGCTACTCCGGAGCTGCTCTCGTGTATCCGCCGCGATCCGTTTGATCTCCGCCATGTGTGCGTT ATTGGCCTCAAGGGATTCATGTTGTCCATCAAAGTGCTTGGAGAAGGTGAGGACGAGGTTCTGGTGAAGGAACTTCGCGTTCCTACTGATTGCGCTGACT TGCTGAAGCTCGAGAAGGATGCTGCCGCCGGATCTTCTTCTTCTTCCTCCTCCTCCGCTTCCGCCCCTGCTTCTGCCGTCTTCCCGCTATACTCCGTTAA GTTGACGTTTTCGCCGCACTGGCAGCACATTCTGTTCGTGACGTTCCCTAAAGAGGTGGTGGTGTTCGATTTGCAGTACGAGACTGCACTATTTAGTTCT TCACTGCCGAGAGGGTGCGCCAAGTTCTTGGACGTGTTGACGGATCCGAATAGCCGCTTCTTGTACTGTGCACACCTGGATGGCAAGCTCAGCGTCTGGC GGCGTAACGGAGAAGAACAGGTGCATGTGATGTGCTCAATGGAAGAATTAATGCCTTCGCTAGGAACTTCTGTTCCTTCACCTTCATTACTTGCTGTAAC CATCTGTCAATCAGACTCCACTCTGCAGAATATTGCTAAGTTATATCGAGATGCTCCCTTGTCCCAGGATATTGACAACCCTTTCGATTTCTATGATGAG TCTCTACTTCTTTCCAAGACATACATGATTTCGATTTCTGATGATGGCAAATTATGGAATTGGCGTTTAACTGCTGAAGAAATAGTAGAAAAGGATGTCA ATATAATCCCATATATAGGAGATGATTTCAACAGTGGTGGTATCAAGCTGGAAGGAAACAAGCAAAATGAGAACTTACGTGGCGATAAAGGGCGGTCATC ATCTCTTCCCAGTGAAGACAATACAACATTCAAGATATGCTTGGTTGGACAGCTGCAGCTGCTTTCCTCAACATTAACAATGCTGGCTGTTCCATCTCCT TCTTTAACAGCTACTTTAGCTCGCGGGGGAAACTATCCTGCTGTAGCAGTGCCACTTGTTGCGTTAGGAACTCAGAGTGGAATGGTTGACATTGTTGATG TCTGTGCAAATGCTGTTGCTGCAAATTTTTCTGTTCACACAAGCTCAGTTCGTGGTCTGCGATGGCTTGGAAACTCTAGATTGGTTTCGTTCTCTTACAG TCAGGCTAATGAAAAGACTGGAGGTTATGTAAATCGACTTGTTGTAACATGCATTAGAAGTGGCCTTAAAAGACCATTCCGTGTTCTACAGAAGCCGGAG CGTGCACCCATTAGAGCCTTAAGGGCTTCTTCATCTGGAAGGTACCTTCTTATTTTGTTTCGTGACGCACCGGTGGAAGTTTGGGCAATGACGAAAAGTC CCGTTATGGTTATTCTTACACAGGCTGAGAATGTGATGTTGTTACCCTGCATTCTCAAGCTTAGATCCTTAGCTCTTCCATTCACAGTGTTGGAATGGAC CCTTCCAACCGTTCCAAAGCCAGCCCAGAATGGTACTCCAAGCACACCTAGGGCATCAGATGGTCCATCCACCCCAAAACCATCTTCGTCAGAATCTACT GTGAGCTCAGATACATCTCAAGAAGAGATTGCAGAAAGCTTTGCATTTGCACTCGTGAATGGGGCACTTGGAGTTTTTGAGGTTCATGGGCGGAAGATTC GAGATTTTAGGTGTCTGTTCCTTCTGCTTTCTATTCCTCGTGCTAGACCAAAATGGCCTTCCTCTTCATTTGTTCCGTCCGATGGACTAATTACAGCAAT GGCCTACCGCTTGCCTCATGTGGTAATGGGGGACAGAACAGGGAACATACGGTGGTGGGATGTAACGACGGGGTCTTCTTCTTCATTTAACACTCACCGA GATGGGATACGGAGGCTTAGGTTCTCACCTGTAGTCCCTGGAGACCAGAGCAGAGGCCGCATAGCTGTGCTCTTTTATGATAATACCTTTTCTGTATTCG ATCTTGATTCACCAGACCCGTTAGCCAATTCCCTCTTGCAGCCGCAGTTTCCTGGAACGCTTGTGTTGGAACTCGATTGGTTGCCCTTGAGAACTGACAA AAATGACCCTCTCGTTTTGTGCATTGCTGGGGCTGATAGTAGCTTTCGCTTGCTTGAAGTTAATGTAAGTGACAAGAGACATGGTTATAGACCTCAGTAT CAATCTCTTAAAGAGAGATTCCGCCCTGTGCCTATTTGCTCTCCTGTACTGCTACCCACTGCCCATGCACTTGCTTTGCGTATGATCTTGCAATTGGGTG TGCAACCTTCATGGTTCAATACATCCAGCACAGCCGTTGATAAGAGGCCACACTCACTTCCTGGCGCTTCGTCATCTGCCGGGGATTTACGTGGTTATAT GATTGATCCACCGGCTATTGGAGATTCTGTGGTGCCTGAAATGCTGCTTAAAGCCTTAGAACCATATCGCAGAGAAGGTTGCATACTTGACGATGACATA GCAAAACTCTATTCAACGGTGCTCAATAAAGGCTGTGCTGCAAGGTTTGCATTTGCAGCCGCTGTTTTTGGTGATACCTCCGAAGCACTCTTCTGGTTAC AATTGCCTCATGCTTTAAAGCATCTGATGAGCAAACTAGCAAGCAGATCTCCATTAAAACCTGCAATGTCAGCAACAGCAACAGAGCTAGATGGTGCAGC CATGTTGACCAGAATTGCCTCTAGGGAAAAGTCGATGGCTAGTATGGGGAGAAGGGGCTCATCGCTGAGTCACAGTCCACTGAGATTGATGGTTTTCGAG CAGGAAGAGCTGTGGGAGAGTGCAAATGAGCGTATTCCTTGGCATGGAAAACTGGAGGGAGAAGCAGCTGTCCAGAATCAAGTGCACGAGCTTGTGACGG TTGGGAATCTGGAAGCAGCTGTAAGTTTGTTGCTTTCGACTCCACCAGAAAGCTCTTTCTTCTACCCAAATGCTTTACGTGCAGTGGCTCTTTCGTCTGC CGTGTCTAAGTCTCTGCTTGAACTTGCAGTCAAGGTTGTCGCCGCAAACATGGTCAGGACAGACAGATCACTTTCCGGTACTCATCTTCTTTGTGCTGTT GGAAGGCATCAAGAAGCATGTTCACAGCTTCAAGATGCTGGATGCTGGACTGATGCCGCAACTCTTGCTGCTGCGCATTTGAACGGATCAGATTACGCGA GAGTTCTGCAGAGGTGGGCAGGGCATGTTCTTCATACGGAGCATAATGTTTGGAGAATTATTCTGTACATTGCTGCTGGTGCTTTGCCGGAGGCCCTGGC AGGACTCCGGGAGGCACAACAACCAGACACTGCTGCTATGTTCATCCTAGCTTGCTGTGAAATCCATGCCGAAATCCTGTCAAGTTCAGCAGGCGAAGCA GGTTGTTCAGGATCAGCAGCCAGGTTACCTGGTTTAGAAGCAGAGAACGAAGATGTGCTGGTGGTTGGTGAATATTTCGGAGAGTACCAGAGGAAATTGG TCCATCTGTGCATGGAATCACACCCGCTTTATGACTGA
AA sequence Show only first row Show all	>Lus10043261 pacid=23167972 polypeptide=Lus10043261 locus=Lus10043261.g ID=Lus10043261.BGIv1.0 annot-version=v1.0 MSPAATPPADTSPWECMLPGPPSRNNFGSVDISASGLLAFPSGSSVSVVDSRSLQHIATIPLPAPTSSSSSSASTALSPFVTSVRWTPLPLRRDLLVTEP SSSHLILAAGDRHGRIALVDFRHRSILLWLESDSSSKCGIQDLCWILCKPDSYILAALSGPSTLSLYNTASGYCFFKYDATPELLSCIRRDPFDLRHVCV IGLKGFMLSIKVLGEGEDEVLVKELRVPTDCADLLKLEKDAAAGSSSSSSSSASAPASAVFPLYSVKLTFSPHWQHILFVTFPKEVVVFDLQYETALFSS SLPRGCAKFLDVLTDPNSRFLYCAHLDGKLSVWRRNGEEQVHVMCSMEELMPSLGTSVPSPSLLAVTICQSDSTLQNIAKLYRDAPLSQDIDNPFDFYDE SLLLSKTYMISISDDGKLWNWRLTAEEIVEKDVNIIPYIGDDFNSGGIKLEGNKQNENLRGDKGRSSSLPSEDNTTFKICLVGQLQLLSSTLTMLAVPSP SLTATLARGGNYPAVAVPLVALGTQSGMVDIVDVCANAVAANFSVHTSSVRGLRWLGNSRLVSFSYSQANEKTGGYVNRLVVTCIRSGLKRPFRVLQKPE RAPIRALRASSSGRYLLILFRDAPVEVWAMTKSPVMVILTQAENVMLLPCILKLRSLALPFTVLEWTLPTVPKPAQNGTPSTPRASDGPSTPKPSSSEST VSSDTSQEEIAESFAFALVNGALGVFEVHGRKIRDFRCLFLLLSIPRARPKWPSSSFVPSDGLITAMAYRLPHVVMGDRTGNIRWWDVTTGSSSSFNTHR DGIRRLRFSPVVPGDQSRGRIAVLFYDNTFSVFDLDSPDPLANSLLQPQFPGTLVLELDWLPLRTDKNDPLVLCIAGADSSFRLLEVNVSDKRHGYRPQY QSLKERFRPVPICSPVLLPTAHALALRMILQLGVQPSWFNTSSTAVDKRPHSLPGASSSAGDLRGYMIDPPAIGDSVVPEMLLKALEPYRREGCILDDDI AKLYSTVLNKGCAARFAFAAAVFGDTSEALFWLQLPHALKHLMSKLASRSPLKPAMSATATELDGAAMLTRIASREKSMASMGRRGSSLSHSPLRLMVFE QEELWESANERIPWHGKLEGEAAVQNQVHELVTVGNLEAAVSLLLSTPPESSFFYPNALRAVALSSAVSKSLLELAVKVVAANMVRTDRSLSGTHLLCAV GRHQEACSQLQDAGCWTDAATLAAAHLNGSDYARVLQRWAGHVLHTEHNVWRIILYIAAGALPEALAGLREAQQPDTAAMFILACCEIHAEILSSSAGEA GCSGSAARLPGLEAENEDVLVVGEYFGEYQRKLVHLCMESHPLYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G33530			Transducin family protein / WD...		Lus10043261 [exp]	0	1
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	4.2	0.7705
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10043256 [exp]	6.3	0.7342
AT3G57630			exostosin family protein (.1.2...		Lus10026311 [exp]	6.8	0.6907
AT2G39260			binding;RNA binding (.1)		Lus10040364 [exp]	9.8	0.7687
AT5G65290			LMBR1-like membrane protein (....		Lus10035927 [exp]	10.4	0.7101
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001860 [exp]	10.8	0.7335
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	16.9	0.7476
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10032500 [exp]	18.7	0.6873
AT5G62760			P-loop containing nucleoside t...		Lus10042176 [exp]	24.5	0.7474
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	26.3	0.7247

Compare expression of checked genes

Lus10043261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.