Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24150 253 / 3e-82 unknown protein AT4G32295 216 / 5e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019404 [exp] 513 / 0 AT3G24150 251 / 6e-82 unknown protein Lus10001504 [exp] 204 / 3e-63 AT4G32295 208 / 9e-67 unknown protein Lus10002918 [exp] 93 / 1e-22 AT4G32295 98 / 1e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G067100 [exp] 313 / 2e-104 AT3G24150 259 / 2e-83 unknown protein Potri.018G128700 [exp] 275 / 2e-91 AT3G24150 248 / 1e-80 unknown protein Potri.006G254700 [exp] 238 / 2e-75 AT4G32295 243 / 8e-79 unknown protein Potri.018G027100 [exp] 234 / 6e-74 AT4G32295 238 / 6e-77 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043262 pacid=23168030 polypeptide=Lus10043262 locus=Lus10043262.g ID=Lus10043262.BGIv1.0 annot-version=v1.0 ATGCCAAGGCCTGGTCCGAGACCTTATGAGTGTGTTAGGAGAGCTTGGCACAGCGATAGGCACCAGTCCATGAGGGGTTCCATCATTCAGCAGATTTTCA GGGCTGTGAGTGAGAATCACAGTGCTGGTACTAGGAAGAACAAGGAATGGCAGGAGAAATTGCCTATTGTGGTCTTGAAGGCTGAGGAAATCATCTATTC TAAAGCCAACTCTGAGGAAGAGTATATGAGCCAGGAAACTCTGTGGGATCGTGTCAATGAAGCCATCAACACCATCATTCGTCGAGAAGAGCAGACTGAA ACTGGCAAGCTTTTGCCCCCTTGTGTTGAAGCTGCGTTGAATCTGGGTTGCATTCCTGTGCGGGCTTCCAGAAGCCAGCGACATACAAACCAGAGAACTT ACCTCAGCCCGAGAATCCAAGAACCTGCACGACCTTCTTCACCTGTGCGACCACTACCTGCAAGGTTTTTGAGTGATGAGAGAACCCCTCAGTTGCCGCC ATTTCATTCCGGCAATCAGAATTCAACAGCAGCTGCGGATTCTAGTTGGTTGATGGCAACAAAGGAAGCTGACACAGTATCGCGATATGGCACTGTGTAT CCTTTATATTACGGCGATCGCTACGAAAATAAGGAGCCGCAGTTTGTGTCTCAAGTTCCGGAGAGACCAGCCCCCACCAGCACTATTTTGTTGGGTAAAC CCATTAGTACATCAGCTGCTAGGCCTTCTGAAATGGGGACCCTGAAGAATTTTTTGACTCCAAGTTATGAGATTGCTTCATCGAGGACTGAATATCGAGA TGTCCATGATCATGGAGCAGGAACACAGTGTGATTTGTCATTGAAGTTGGGGTTTTCTTCAGACCCATGGGAAAGAAATGCTGGTCATGATCCTTCTCTA CCAAACAGCCAGGAGTTCAGTTTTTTCCCTGGTAATAGCAATAGTAATAGTAATGAGTTCGAGTTCCCTTCGATGAAGACGCACTTCAGTGGCAATGTGG AGGATGGACAGTCCTGCTGTCCTCCTGGTTTCCCATCGAACCGTTTCATTGGTTGA
AA sequence Show only first row Show all	>Lus10043262 pacid=23168030 polypeptide=Lus10043262 locus=Lus10043262.g ID=Lus10043262.BGIv1.0 annot-version=v1.0 MPRPGPRPYECVRRAWHSDRHQSMRGSIIQQIFRAVSENHSAGTRKNKEWQEKLPIVVLKAEEIIYSKANSEEEYMSQETLWDRVNEAINTIIRREEQTE TGKLLPPCVEAALNLGCIPVRASRSQRHTNQRTYLSPRIQEPARPSSPVRPLPARFLSDERTPQLPPFHSGNQNSTAAADSSWLMATKEADTVSRYGTVY PLYYGDRYENKEPQFVSQVPERPAPTSTILLGKPISTSAARPSEMGTLKNFLTPSYEIASSRTEYRDVHDHGAGTQCDLSLKLGFSSDPWERNAGHDPSL PNSQEFSFFPGNSNSNSNEFEFPSMKTHFSGNVEDGQSCCPPGFPSNRFIG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24150			unknown protein		Lus10043262 [exp]	0	1
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10003088 [exp]	7.1	0.7872
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10042414 [exp]	7.3	0.7723
AT1G05430			unknown protein		Lus10006108 [exp]	7.5	0.7805
AT3G24150			unknown protein		Lus10019404 [exp]	8.1	0.7839
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10039207 [exp]	8.5	0.7696
AT5G45650			subtilase family protein (.1)		Lus10007083 [exp]	16.4	0.7878
AT1G78170			unknown protein		Lus10026738 [exp]	19.9	0.6998
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10035367 [exp]	20.1	0.7590
					Lus10035486 [exp]	21.8	0.7832
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10033044 [exp]	23.5	0.7261

Compare expression of checked genes

Lus10043262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.