Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15340 124 / 6e-33 MBD10 methyl-CPG-binding domain 10 (.1.2) AT3G15790 114 / 3e-30 MBD11, ATMBD11 methyl-CPG-binding domain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019406 [exp] 339 / 1e-117 AT1G15340 137 / 3e-39 methyl-CPG-binding domain 10 (.1.2) Lus10002168 [exp] 156 / 1e-45 AT3G15790 136 / 3e-38 methyl-CPG-binding domain 11 (.1) Lus10030108 [exp] 147 / 2e-41 AT3G15790 145 / 5e-41 methyl-CPG-binding domain 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G067700 [exp] 135 / 8e-38 AT1G15340 137 / 2e-37 methyl-CPG-binding domain 10 (.1.2) Potri.018G129700 [exp] 132 / 1e-36 AT1G15340 134 / 7e-37 methyl-CPG-binding domain 10 (.1.2) Potri.001G192300 [exp] 50 / 2e-07 AT1G15340 61 / 9e-12 methyl-CPG-binding domain 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10043263 pacid=23168089 polypeptide=Lus10043263 locus=Lus10043263.g ID=Lus10043263.BGIv1.0 annot-version=v1.0 ATGGCGAGCTTGGTTGACAAGGAAGAGACTATTAACACCACTACTATCAGGGACGAAGGTTTCTCTGTCGAGCTCACTGCTCCTCCTGGCTGGAAGAAGA TGTTCTCACCCAAGAAGAAGAAAGGTGAGATTGCATTTGTTGCCCCTACAGGGGAGGAAATAACTGGTAAGAGACAGTTGGAGCAGTATCTCAAAGCGCA TCCTGGTGGACCACCAGCAGCTGAGTTCGATTGGAGCACTGGTGAGACACCAAGGCGATCCTCAAGGATCAGTGAGAAGGTGAAGGCAGCTCCGCCTCCA CAAAGTGAGCCTCCAAAGAAGAAGGGCAAGAAGTCATCCGCAACGAAGAATGAGGCCAAACAGACTGGTGATGATGGAGCTCAGGAGGCAAAAGACGTCA GTATGGAGGAAGCAGGAAAGGGTGAGAAGGATGACCCTTCAGCTGTCAAAGAAGAGAATGTTGTGAAAGAAAGCAAGGATGAGGGCAAAGAAGAAGCACC ACAAGGTCCCGATGATACTGAAAAGATTAAGGATGAGCAAGATGGAGCTGCAGCTCAGAAGGAATCCGCTGAAGCTGAAGTTCAGCTCACCATAGGTGAG AAGGCTGAAGAAGTGCAGGATAAGGAGAAGCAACCGCAGGTAGAAGAAACAGAAACAGGGGAGGAAAAAAAGACAACGACCGAAGCTGAAGGAGGCGAGA AAGAGCAAAGCGTAGCAGCACCAGAAGCAGAGATCAAGGACAAAGAGGCAGCAAATGGGAGCAGCAGCGAGAAGGATGATGGTGAGGAAACTGAGAAAGT CGAGGGAGGCTCGTCCATGGAGAACGGAAGCCTTGCTGCTGCTACTGCTACCTGA
AA sequence Show only first row Show all	>Lus10043263 pacid=23168089 polypeptide=Lus10043263 locus=Lus10043263.g ID=Lus10043263.BGIv1.0 annot-version=v1.0 MASLVDKEETINTTTIRDEGFSVELTAPPGWKKMFSPKKKKGEIAFVAPTGEEITGKRQLEQYLKAHPGGPPAAEFDWSTGETPRRSSRISEKVKAAPPP QSEPPKKKGKKSSATKNEAKQTGDDGAQEAKDVSMEEAGKGEKDDPSAVKEENVVKESKDEGKEEAPQGPDDTEKIKDEQDGAAAQKESAEAEVQLTIGE KAEEVQDKEKQPQVEETETGEEKKTTTEAEGGEKEQSVAAPEAEIKDKEAANGSSSEKDDGEETEKVEGGSSMENGSLAAATAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10043263 [exp]	0	1
					Lus10024538 [exp]	1.4	0.9083
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019188 [exp]	1.7	0.9056
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	2.2	0.9221
					Lus10003566 [exp]	2.4	0.8626
AT3G52230			unknown protein		Lus10038643 [exp]	2.8	0.8846
AT3G16190			Isochorismatase family protein...		Lus10037581 [exp]	5.5	0.8538
AT1G29850			double-stranded DNA-binding fa...		Lus10004540 [exp]	6.5	0.8591
AT5G01075			Glycosyl hydrolase family 35 p...		Lus10018699 [exp]	7.5	0.8202
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10019084 [exp]	9.0	0.8573
AT3G27050			unknown protein		Lus10035208 [exp]	9.8	0.8251

Compare expression of checked genes

Lus10043263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.