Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35410 628 / 0 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT4G24400 536 / 0 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT1G30270 477 / 2e-164 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G21326 472 / 8e-163 Ca2+regulated serine-threonine protein kinase family protein (.1) AT2G26980 454 / 7e-156 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT1G01140 445 / 2e-152 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G25110 375 / 2e-124 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G45820 370 / 3e-123 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G10930 367 / 8e-122 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT4G30960 358 / 1e-118 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019411 [exp] 806 / 0 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10032822 [exp] 531 / 0 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10022590 [exp] 473 / 7e-164 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10028115 [exp] 470 / 8e-162 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 469 / 1e-161 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10002692 [exp] 444 / 8e-152 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10030210 [exp] 442 / 4e-151 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10021488 [exp] 421 / 4e-144 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10007283 [exp] 381 / 4e-127 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130500 [exp] 666 / 0 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 642 / 0 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.002G109000 [exp] 552 / 0 AT4G24400 652 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Potri.001G222600 [exp] 480 / 4e-166 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.006G062800 [exp] 477 / 2e-164 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.009G021000 [exp] 472 / 7e-163 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.018G119200 [exp] 467 / 2e-160 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.014G104200 [exp] 462 / 4e-159 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.002G177900 [exp] 457 / 3e-157 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.010G002500 [exp] 373 / 4e-124 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF04690 [flax] [poplar] YABBY YABBY protein CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10043264 pacid=23168115 polypeptide=Lus10043264 locus=Lus10043264.g ID=Lus10043264.BGIv1.0 annot-version=v1.0 ATGGGAAGCTGCAGCATAGAGATGGTGGCTGATCAGCAGCTTTGTTACGTCCCTTGCAACTTCTGCAATATTGTTCTTGCGGTGAGCGTTCCATGCAGCA ATCTGATGGACATAGTAACAGTGAGATGCGGTCACTGCACAAACCTGTGGTCAGTGAATATGGCTGCCGCGTTTCAGTACTCTCTTTCAGCTGCTTCCCG TGCTCAGCAGCAGCAGCAACCAGCAGCAGATCACCTCTCCCTTCACCACCACCAGAAGGGAGGAAACTACAATGTGTATCAAGCAGGAGGGAATACAAAT GATCAACAGTATTACAATGGAGGTGGAGGTGGAGGTGGAGGCTCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCCAAATCCATCCCCA CCACCAAATTAACAGCCCGTGCTTCACCTCCCCAAAATCGAATCGTTAATCGACCTCCCGAGAAGCGTCAGCGAGTGCCTTCTGCATACAACCAGTTCAT AAAGGAAGAGATCCAGAGGATCAAAGCCAATAACCCAGACATCACTCACCGTGAAGCTTTTAGCACCGCCGCTAAAAATATTAAACGAGAAATTTCGATC ATGAAGATTGTCAGACATCCTTATATTGTCAGGTTACACGAGGTTTTGGCAGGACGGACGAAGATATATATCATTCTCGAGTTTGTTACCGGCGGAGAAC TGTATGATAGAATTGTTCACCAAGGAAGACTTAAAGAACATGAGGCGAGGCGATACTTTCAACAGCTTATAGATGCAGTGGATCACTGCCATAGTAAGCG TGTGTACCACAGAGACCTCAAGCCTGAAAACCTTCTTCTAGATGCCGCTGGGAATTTGAAGGTTTCCGACTTTGGATTAAGTGCGTTGCCTCAGGACGGT GTCGGTCTTCTCCATACCACCTGCGGTACACCAAATTATGTTGCACCTGAGGTGCTTCGCCACCAAGGTTATGATGGTGCAGCTGCTGATATATGGTCAT GTGGCGTAATCCTCTACGTTCTTATGGCTGGATATCTACCCTTTGATGAGACAGACCTTCCTACTTTATACAAGAAGATAAATGCTGCAGAATTCACTTG TCCCTTTTGGTTTTCTCCAGAGGCAAAGGCTCTAATAGATAAGATACTTACTCCCAATCCTGAAAATCGCATACAGATTAATGCAATAAGAAGAGATCCA TGGTTCAGAAAGAACTATATGCCTGTAAAAATCAGCAAAGAGGAAGAAGTGAATCTGGATGATGTTCGTGCAGTTTTTGATGACATTGAGGACCAATACG TAGCAGAGAAAACAGAAAGCAGTGATACAGGACCATTACTAATGAATGCCTTTGAGATGATTACCCTTTCCCAAGGGCTAAATCTATCAGCACTCTTTGA CAGACACCAGGACTATATAAAGAGGCAGACCCGTTTTGTATCCCGCAGACCAGCAAAGGATATAATTTCAACAGTTGAAGCAGTTGCCGTCTCGATGGGC CTCAAGGTTCATACACGTGGTTACAAGGTCCAACCTCCAACTAGACTTGAAGGGATGTCAGCAAATAAAGCAGGGCAACTAGCAGTGGTGTTGGAGGTTT ATGAGGTTGCGCCTTCATTGTTCATGGTGGATGTTAGGAAGGCATCTGGGGAGACTCTCGAGTATCACAAGTTCTACAAGAAATTCTGTGCAAGCCTTGA GAATATTATATGGAAAGGAGCAGAAGGTGCGACTTCGGACTTGCTACGAACGATGACTTGCTGA
AA sequence Show only first row Show all	>Lus10043264 pacid=23168115 polypeptide=Lus10043264 locus=Lus10043264.g ID=Lus10043264.BGIv1.0 annot-version=v1.0 MGSCSIEMVADQQLCYVPCNFCNIVLAVSVPCSNLMDIVTVRCGHCTNLWSVNMAAAFQYSLSAASRAQQQQQPAADHLSLHHHQKGGNYNVYQAGGNTN DQQYYNGGGGGGGGSSSSSSSSSSSSSSAKSIPTTKLTARASPPQNRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNIKREISI MKIVRHPYIVRLHEVLAGRTKIYIILEFVTGGELYDRIVHQGRLKEHEARRYFQQLIDAVDHCHSKRVYHRDLKPENLLLDAAGNLKVSDFGLSALPQDG VGLLHTTCGTPNYVAPEVLRHQGYDGAAADIWSCGVILYVLMAGYLPFDETDLPTLYKKINAAEFTCPFWFSPEAKALIDKILTPNPENRIQINAIRRDP WFRKNYMPVKISKEEEVNLDDVRAVFDDIEDQYVAEKTESSDTGPLLMNAFEMITLSQGLNLSALFDRHQDYIKRQTRFVSRRPAKDIISTVEAVAVSMG LKVHTRGYKVQPPTRLEGMSANKAGQLAVVLEVYEVAPSLFMVDVRKASGETLEYHKFYKKFCASLENIIWKGAEGATSDLLRTMTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043264 [exp]	0	1
AT1G60460			unknown protein		Lus10036440 [exp]	3.5	0.7045
AT5G64500			Major facilitator superfamily ...		Lus10011580 [exp]	5.0	0.7468
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043267 [exp]	12.0	0.6711
AT4G32600			RING/U-box superfamily protein...		Lus10013144 [exp]	14.3	0.6007
AT1G02270			Calcium-binding endonuclease/e...		Lus10030173 [exp]	14.4	0.6883
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10015656 [exp]	17.5	0.6739
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10032285 [exp]	27.7	0.6762
AT2G20010			Protein of unknown function (D...		Lus10034947 [exp]	34.9	0.6787
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	35.4	0.6800
AT2G28320			Pleckstrin homology (PH) and l...		Lus10016094 [exp]	39.2	0.6775

Compare expression of checked genes

Lus10043264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.