Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20200 263 / 8e-77 nucleoporin-related (.1) AT3G10650 73 / 5e-13 AtNUP1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019408 [exp] 1341 / 0 AT5G20200 273 / 2e-80 nucleoporin-related (.1) Lus10034137 [exp] 58 / 3e-08 AT3G10650 323 / 2e-92 unknown protein Lus10028861 [exp] 58 / 4e-08 AT3G10650 436 / 2e-131 unknown protein Lus10008959 [exp] 57 / 9e-08 AT3G10650 405 / 4e-120 unknown protein Lus10043447 [exp] 46 / 0.0001 AT3G10650 320 / 4e-90 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G129900 [exp] 479 / 7e-159 AT5G20200 317 / 1e-96 nucleoporin-related (.1) Potri.008G014800 [exp] 91 / 2e-18 AT3G10650 379 / 1e-110 unknown protein Potri.010G244700 [exp] 89 / 6e-18 AT3G10650 353 / 8e-102 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043265 pacid=23168061 polypeptide=Lus10043265 locus=Lus10043265.g ID=Lus10043265.BGIv1.0 annot-version=v1.0 ATGGAGAGGAAGAACGATTCCCGCTACACGTCACCGTACCTCGCCGGAGAAGAAGGTAGAGGGGCCGGCGGAAAGTTCAGGAAGCGCCCGGCCAGGAGAA CTTCTGCTTCTGCTACGCCTTATGCTCGGCCCCAGCCGATCTTAGCGCAGCGTACGCGGCCTTGGCTCTCCAGGCTAGCTAACCTAATCTTACCTAGCTT CTTCTCTCAATCAAATGCCCTCCCTGCTCCTCCAGACACTGCGCGACGAGTTGAAGATGAAGAAGAGGAAGAAGAAGATGATCACGGGGATTCTGGAAAT AACACTGGAGAGGAAAACGATAGAGGGGATGATGGAAGTTTTTCATTCAATCATCTGGTTCCGGGATCAACTCAGCTCAGTAGTGCTAATGGAGCCACTA ATGAAATAAGTTCTCAGCCGGAGGTTGAAAGACATGGAGAACAGCATAAGGTTGATACGTCTGATCATAATGGTCTATCTGAAATCGAACAGCTACTGCA GAATAAAAATTTTTCTAGGGATGAAGTCAACAGGCTTATTGGGGTACTTCGTTCCAAGGCTGATACTTCTCCCAACAAGGAGCAAGAGAAGCAACATTCT GAAATGTTTGGGCGGGATGATCAGGGTTCGGCTTTCCTTGAAGATTCTCAAAGGCACAGTCAAGAAAAGCTGGGATTTTCGCGCCCAAAAGTTTGGGGAA CTTCAGAGATGAAGAACAAGTATCCAAGTTCAGTAACACAAGCCGTTATTAACCCTGCTTCGTGGGCTGAGAATTCAAGAATGTCTTATGAAAGAAAGCA TGACGACACCAATGAGGTTACAGATGACGTGGGTGCTTCACCAATCCAAATTGCCAAAGCTTACATGCAAAAACGGACTTCGGAAGCAGGATTTGCATCC GAGGATGCAGCTGTAAGAGATGAAGGGCCAGCATCTTGTGTTGACGAGCAAGCACTTAAACCATATATGGCATCATCTTCTATTAGGTCATCGACATGCT GGCCAGGTGCCAGGGTCCGAGATCAGACTGAGTATGCCACCCCTGTCAGTCAAAGAGGAAGATTTGGCTTTCAAAGCTTCCATAGGACCCCTTATTCTAG AGCTATTGCTTCAAAGTCCAAGACTAAGTTGCTCCAGTTGCAAGGGAATAATGATAAGCCCCTGAACTTGCCTTCAACTCCTTTCCAGCATTCTCAATCA TCCACTTATGGACGGTTCAGTTCAAAGGAGAAGTTGGGTACTGGTGAAGGATCTGTAGGACCTATCCAAAGAACACGACGACGGGGAGCTATAGACCTTC CAGCCAGAGGATCTCCCTTTTTAAGGCCATCCATGGATAGTCCCAAGGTTGAAAACTTGCATGATTCTGAAGGCATATTTTCTGCCTGGAAGAAGGATTC TGAGAAGGGAAGAATGCCTTACTCTGAAGTTGGTGTTCCAACTGTTCCTTCACATTCTAGCCAGACAGCTCGCAAGATATTAGAGCATCTGGACAGAAAC CCGGTAACTCCAAAAGAAAAGTCTGCCGAGTTAAGGCGGGCCACTGCATGGAAGAAGCCTGAATCTTCTAACACGACCACTTTGATGCCATTCGAGTATA ATAGCTTGCCTCAGTTTGGGATTCTTGATTCAATTGGAAAATCAAGCCAGGTTCATCAAAAAAAATCTGTACACTGGGGTGAAGACAGAGGGAAGTCTCT GTTTTCGCATCCTCAGGAATCTAGCAATAAAGCTACTGATCCGGAGGATAAATCTCTCCCCTCTAGCTTAATAATTGGCAGTGATGCCGTACCCCAGGCT GTTGATCCTAAACCATCACAAGAGCTCAAGCGCAAAACGGAGTCCCACGTCAACAAACCAAATGAGAATGTTGCCGTCCTTGAGATTCCAAATCTACCGC ATAAGAAGCCTCCAACCCACTCAACAGGGACGAAACCAGTTTTGCCATCTATCTCCATCGCAAAGCCAGATCAGAAGTGGGCGGCAGCTTCTGGTTTTAC TTTCCAAATTCCTGCACCAAGTGGAATGTCCTCTGAGCCACCGACTCCCTCCATGCCATCTTCCTATGCAAACGGGGTGCATCAGCCCGAAGCTGCTGAT GCAGGAGTGTCGATCCCTACTTACAGCTTTGGCTCAAACAAGGCGTCTCCTGCTCTTGTTTTTTCGTTCCCATCGACTAGCAGCAGCGGCAGTCCCCTTT TACCAGACGCAAAATCAGATTTGAAGTTCAACTTTGGATCAGATAAGAGCAGTAGGGTTTGCTTCAGTTCCATTGGTAAAGATTCCATCTGCTACTAA
AA sequence Show only first row Show all	>Lus10043265 pacid=23168061 polypeptide=Lus10043265 locus=Lus10043265.g ID=Lus10043265.BGIv1.0 annot-version=v1.0 MERKNDSRYTSPYLAGEEGRGAGGKFRKRPARRTSASATPYARPQPILAQRTRPWLSRLANLILPSFFSQSNALPAPPDTARRVEDEEEEEEDDHGDSGN NTGEENDRGDDGSFSFNHLVPGSTQLSSANGATNEISSQPEVERHGEQHKVDTSDHNGLSEIEQLLQNKNFSRDEVNRLIGVLRSKADTSPNKEQEKQHS EMFGRDDQGSAFLEDSQRHSQEKLGFSRPKVWGTSEMKNKYPSSVTQAVINPASWAENSRMSYERKHDDTNEVTDDVGASPIQIAKAYMQKRTSEAGFAS EDAAVRDEGPASCVDEQALKPYMASSSIRSSTCWPGARVRDQTEYATPVSQRGRFGFQSFHRTPYSRAIASKSKTKLLQLQGNNDKPLNLPSTPFQHSQS STYGRFSSKEKLGTGEGSVGPIQRTRRRGAIDLPARGSPFLRPSMDSPKVENLHDSEGIFSAWKKDSEKGRMPYSEVGVPTVPSHSSQTARKILEHLDRN PVTPKEKSAELRRATAWKKPESSNTTTLMPFEYNSLPQFGILDSIGKSSQVHQKKSVHWGEDRGKSLFSHPQESSNKATDPEDKSLPSSLIIGSDAVPQA VDPKPSQELKRKTESHVNKPNENVAVLEIPNLPHKKPPTHSTGTKPVLPSISIAKPDQKWAAASGFTFQIPAPSGMSSEPPTPSMPSSYANGVHQPEAAD AGVSIPTYSFGSNKASPALVFSFPSTSSSGSPLLPDAKSDLKFNFGSDKSSRVCFSSIGKDSICY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20200			nucleoporin-related (.1)		Lus10043265 [exp]	0	1
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10017729 [exp]	2.4	0.8371
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10027906 [exp]	2.4	0.8449
AT5G20200			nucleoporin-related (.1)		Lus10019408 [exp]	3.2	0.7910
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10038880 [exp]	7.7	0.8318
AT3G08960			ARM repeat superfamily protein...		Lus10007842 [exp]	8.7	0.8240
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	13.1	0.7965
AT2G01480			O-fucosyltransferase family pr...		Lus10003715 [exp]	18.9	0.7602
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10011294 [exp]	19.9	0.7900
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	20.0	0.7967
AT3G17900			unknown protein		Lus10037215 [exp]	23.7	0.8263

Compare expression of checked genes

Lus10043265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.