Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35410 136 / 5e-38 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT1G30270 101 / 5e-25 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT4G24400 96 / 3e-23 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT1G01140 83 / 2e-18 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT2G26980 82 / 3e-18 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 79 / 3e-17 Ca2+regulated serine-threonine protein kinase family protein (.1) AT5G58380 69 / 1e-13 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G07070 69 / 2e-13 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G01810 65 / 2e-12 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT4G30960 64 / 5e-12 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043264 [exp] 174 / 2e-51 AT5G35410 630 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10019411 [exp] 165 / 7e-49 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10001383 [exp] 105 / 9e-28 AT4G24400 285 / 2e-94 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10032822 [exp] 105 / 2e-26 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10042816 [exp] 101 / 6e-25 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 100 / 7e-25 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10021488 [exp] 95 / 4e-23 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10022590 [exp] 95 / 7e-23 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10030210 [exp] 82 / 3e-18 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130500 [exp] 149 / 4e-43 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 133 / 4e-37 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G062800 [exp] 102 / 2e-25 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.001G222600 [exp] 101 / 3e-25 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.002G109000 [exp] 101 / 5e-25 AT4G24400 652 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Potri.018G119200 [exp] 100 / 1e-24 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.009G021000 [exp] 99 / 3e-24 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.014G104200 [exp] 87 / 4e-20 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.002G177900 [exp] 83 / 2e-18 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.013G156000 [exp] 70 / 4e-14 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain
Representative CDS sequence Show only first row Show all	>Lus10043267 pacid=23168186 polypeptide=Lus10043267 locus=Lus10043267.g ID=Lus10043267.BGIv1.0 annot-version=v1.0 ATGAATGCCTTTGAGATGATTACCCTTTCCCAAGGGCTAAATCTATCAGCACTCTTTGACAGACACCAGGACTATATAAAGAGGCAGACCCGTTTTGTAT CCCGCAGACCAGCAAAGGATATAATTTCAACAGTTGAAGCAGTTGCCGTCTCGATTGGCCTCCAGGTTCATACACGTGGTTACAAGGTCCAACCTCCAGT TTATGAGGTTGCGCCTTCATTGTTCATGGTGGATGTTAGGAAGGCATCTGGGGAGACTCTCGAGTATCACAAGGTAAAACACACTCGTCGAGATGTAATT CTGCAACGGAATATCCGAAGCAAGAGAGTAAAGATCATCATGAAGAGAACAGACATGTCAGATATGGAAGGCCTCATTCCGTGGCTCTGGACCGCGTTGA AGAAGCAAAATACTCGTCGCCACTACCACCGTCTTTCCTCAAGTGATGTCAGCACCACCGACGAGTACGACGCACCAGCTGATCATCAGTTCACTGGCGA CGATGGTGGAGATCACCACATGCAGTCGAAGGATTTGGCCGTGGGAAGAAGCAGCTGCGTGAGACGGCCGGGAGGAATCGGAGCCAAGCAGAGGGGCCTG TTAGTTTAG
AA sequence Show only first row Show all	>Lus10043267 pacid=23168186 polypeptide=Lus10043267 locus=Lus10043267.g ID=Lus10043267.BGIv1.0 annot-version=v1.0 MNAFEMITLSQGLNLSALFDRHQDYIKRQTRFVSRRPAKDIISTVEAVAVSIGLQVHTRGYKVQPPVYEVAPSLFMVDVRKASGETLEYHKVKHTRRDVI LQRNIRSKRVKIIMKRTDMSDMEGLIPWLWTALKKQNTRRHYHRLSSSDVSTTDEYDAPADHQFTGDDGGDHHMQSKDLAVGRSSCVRRPGGIGAKQRGL LV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043267 [exp]	0	1
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	2.8	0.7809
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	11.8	0.7297
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043264 [exp]	12.0	0.6711
AT2G20010			Protein of unknown function (D...		Lus10034947 [exp]	14.6	0.7304
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10027805 [exp]	16.2	0.6786
AT2G38430			unknown protein		Lus10030356 [exp]	18.0	0.6054
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	18.8	0.7171
AT5G38895			RING/U-box superfamily protein...		Lus10005084 [exp]	19.6	0.7394
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009674 [exp]	19.7	0.7272
AT3G09830			Protein kinase superfamily pro...		Lus10026523 [exp]	26.3	0.6519

Compare expression of checked genes

Lus10043267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.