Plant FIBer expression Database

Lus10043269 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15760 61 / 2e-12 unknown protein
AT1G52565 49 / 2e-08 unknown protein
AT2G35850 37 / 0.0006 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019413
[exp]
181 / 5e-60 AT3G15760 61 / 7e-13 unknown protein
Lus10005715
[exp]
118 / 8e-35 AT3G15760 79 / 2e-19 unknown protein
Lus10030098
[exp]
106 / 5e-30 AT3G15760 77 / 2e-18 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G069100
[exp]
91 / 3e-24 AT1G52565 67 / 7e-15 unknown protein
Potri.018G131100
[exp]
84 / 1e-21 AT3G15760 75 / 5e-18 unknown protein
Potri.001G192800
[exp]
62 / 7e-13 AT1G52565 95 / 6e-26 unknown protein
PFAM info
Representative CDS sequence
>Lus10043269 pacid=23168434 polypeptide=Lus10043269 locus=Lus10043269.g ID=Lus10043269.BGIv1.0 annot-version=v1.0
ATGGCAGTCTCCGGCACCGTTATCCTCCTGGCCCTCCGCCTCCAAAAACCCACCACTACCCACCACTACTTGATCTCCCCCCACCACCCGCCAACTCCCA
TCTTGCGATCTTGCATCTCTTCCGGTAATAAGAACAACAAGACTAAGAAGAAGGTTCGGTTCGCGGATGACGTGGTGGATCCCAAGGGCCACGGCGCCGA
GTTCAGGAGGCACTGCCACGCCAAGATGAACGCCTCTTCTTCTTCTTCTTCTTCTTCCTCCAAGAGATCATGCGGTGGCGATGTTTCTCCGCCGCCGTCG
TCGTCGGCGATAGACAGGGGAATTCCGGCGAACAGAGTGGCTCTCTACTCCGGAATCATAAGGGATCGAGGGGTTCAACGGTTGACTTATTCTCACTGA
AA sequence
>Lus10043269 pacid=23168434 polypeptide=Lus10043269 locus=Lus10043269.g ID=Lus10043269.BGIv1.0 annot-version=v1.0
MAVSGTVILLALRLQKPTTTHHYLISPHHPPTPILRSCISSGNKNNKTKKKVRFADDVVDPKGHGAEFRRHCHAKMNASSSSSSSSSKRSCGGDVSPPPS
SSAIDRGIPANRVALYSGIIRDRGVQRLTYSH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15760 unknown protein Lus10043269
[exp]
0 1
AT3G50910 unknown protein Lus10041772
[exp]
1.4 0.8649
AT4G02920 unknown protein Lus10027996
[exp]
4.5 0.8379
AT1G25400 unknown protein Lus10041438
[exp]
4.9 0.8269
AT4G19110 Protein kinase superfamily pro... Lus10038123
[exp]
8.7 0.8421
AT1G71830 ATSERK1, SERK1 somatic embryogenesis receptor... Lus10006056
[exp]
16.0 0.7898
AT5G65200 ATPUB38 ARABIDOPSIS THALIANA PLANT U-B... Lus10034119
[exp]
17.7 0.8175
AT2G28940 Protein kinase superfamily pro... Lus10016536
[exp]
19.0 0.7675
AT1G75170 Sec14p-like phosphatidylinosit... Lus10010804
[exp]
20.9 0.7470
AT3G17980 AtC2 Arabidopsis thaliana C2 domain... Lus10009053
[exp]
24.0 0.7576
AT1G15140 FAD/NAD(P)-binding oxidoreduct... Lus10013488
[exp]
26.1 0.8031

Lus10043269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.