Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042837 [exp] 43 / 8e-05 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038660 [exp] 0 / 1 AT5G36228 38 / 0.002 nucleic acid binding;zinc ion binding (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043270 pacid=23168031 polypeptide=Lus10043270 locus=Lus10043270.g ID=Lus10043270.BGIv1.0 annot-version=v1.0 ATGGACCGTCTAATCATCCGATCCAAAACCCCCTCAAGTCATTCCACCACAAGAAGCAAGCTTTTTATTCCCTTAGACCCAGCTGTGGCGGCCAGAACCG AGGCCTTCCACCTGGTTGAAAAGTGTTGTGGGACAAAGCTGTCAATCAAGTGGGCGGACATAGGGGTCATCAGAAAGGCCTGGCAAAATTTTGGAATCCC TGACGTCAAGGAAGTGGAGCTGAGGACAGATGTGTTCATCTCCACACTCTGCAACAAACAACAACAATACTATGCCATCAACCACCAACCCTACGCAGTC TTTGGAGCCCTCCTCAGTGTCAAGCTTTACGACGGTGACTTTAGGCCAAAGGGAGTCGGGTTCAAGAACATCCCCTATAGGTCCAACTGGAAGGTGTCCC AAAGCACCACATACTTCCCCTTCCTCCATGAAGTGGCAGGGGCTGGCTTAGACCGAACCAAATATTCCAAAGCAATCAGGATCAAAGTGGATGTTAATGC TGAAGACTCCCTTCCTCCATGGAAATGTCGCACAATCAACCGGACAGAAAAGTGTGGTTCATATACGAAAGACTCCAAGAAGTGTGCGAGTTCTGTGGAA GACTAG
AA sequence Show only first row Show all	>Lus10043270 pacid=23168031 polypeptide=Lus10043270 locus=Lus10043270.g ID=Lus10043270.BGIv1.0 annot-version=v1.0 MDRLIIRSKTPSSHSTTRSKLFIPLDPAVAARTEAFHLVEKCCGTKLSIKWADIGVIRKAWQNFGIPDVKEVELRTDVFISTLCNKQQQYYAINHQPYAV FGALLSVKLYDGDFRPKGVGFKNIPYRSNWKVSQSTTYFPFLHEVAGAGLDRTKYSKAIRIKVDVNAEDSLPPWKCRTINRTEKCGSYTKDSKKCASSVE D

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10043270 [exp]	0	1
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	3.5	0.8714
AT1G18440			Peptidyl-tRNA hydrolase family...		Lus10032480 [exp]	3.5	0.8458
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10002649 [exp]	3.5	0.8708
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	4.5	0.8520
AT5G65100	EIL		Ethylene insensitive 3 family ...		Lus10014331 [exp]	9.8	0.8246
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	11.1	0.8804
AT4G05160			AMP-dependent synthetase and l...		Lus10013831 [exp]	13.4	0.8163
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10022336 [exp]	13.6	0.8610
					Lus10009515 [exp]	14.7	0.8346
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	19.1	0.8658

Compare expression of checked genes

Lus10043270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.