Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20150 344 / 5e-120 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT2G26660 336 / 3e-116 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT2G45130 212 / 3e-68 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT5G15330 204 / 2e-64 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) AT4G11810 51 / 5e-07 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1) AT1G63010 50 / 1e-06 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein AT4G22990 47 / 1e-05 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT3G23430 47 / 1e-05 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT2G03240 46 / 2e-05 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 44 / 7e-05 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019415 [exp] 550 / 0 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10030095 [exp] 380 / 8e-134 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10002018 [exp] 310 / 4e-106 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10002908 [exp] 307 / 8e-105 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10009314 [exp] 54 / 7e-08 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10006340 [exp] 51 / 7e-07 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015852 [exp] 50 / 2e-06 AT4G22990 926 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10021164 [exp] 45 / 6e-05 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10011799 [exp] 44 / 0.0001 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G131500 [exp] 392 / 2e-138 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.006G069500 [exp] 384 / 3e-135 AT5G20150 359 / 8e-126 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G028200 [exp] 330 / 5e-114 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.006G253400 [exp] 311 / 2e-106 AT5G20150 308 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.002G143900 [exp] 226 / 2e-73 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.014G061400 [exp] 224 / 1e-72 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.017G086600 [exp] 179 / 1e-54 AT5G15330 335 / 4e-115 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) Potri.001G193200 [exp] 170 / 2e-52 AT5G20150 158 / 2e-48 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.001G135950 [exp] 103 / 2e-27 AT2G45130 121 / 7e-35 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.014G078000 [exp] 49 / 3e-06 AT4G22990 978 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Lus10043272 pacid=23168239 polypeptide=Lus10043272 locus=Lus10043272.g ID=Lus10043272.BGIv1.0 annot-version=v1.0 ATGAAGTTCGGGAAAAGCCTCAGCAACCAGATCGACGAGACTCTCCCTGAATGGAGAGACAAATTCCTCTCCTATAAGGACCTCAAGAAGAGATTGAAGC TCATTGGAGGAACAGACAGGCCTGCCAAGCGTCCCAGATTGGACGGAGGCGATGATTGCTCCGCCGCCTTCATGACGGAGGAGGAGATCGATTTCATTAA CCTGTTAGAAGACGAGCTCGAGAAATTCAACGCCTTCTTTGTCGAGAAGGAGGAGGAGTACATCATCAGGCTCAAGGAGCTACAAGACATGTTAGTAAGT GCTGAGGATTGTAACGAGGAAATCATAAAAATTCGCAAAGAGATCGTTGACTTCCATGGAGAGATGGTTTTGCTGGAGAACTACAGCGCCCTTAACTATA CAGGACTAGCAAAGATATTAAAGAAGTACGACAAGAGAACCGGGGCACTTATCCGTCTCCCCTTCATCCAAAAGGTACTGCAACAGCCATTCTTCACCAC TGACCTGCTAAACAAACTAGTGAAAGAGTGCGAGACGATGCTAGACCGCCTGTTCCCACGGAAAATGGCAGCAATGGCGCCGTCAGCTGTTGCAGGCCCA TCTTCTTTTGACGATGGGGATGACGAATGCTGCCCATCAACTTCAGCTGCTGCTGCTGATAATGAGGAACTTGCAGAGATTGAGCAGATGGATGATAGCT TATACCTGAAAAGCACCAAGTCAGCACTGCGGATTTTGCAGGAAATTCGCAGTAAAAGCTCCACAGTTAGTGCGTTTTCATTGCCGCCATTGCAGATTGG TGGGCTAGAAGATTCTTGGAGTAATGTTCCAATCCTGGAACAAGCAGCGAAATCCTGA
AA sequence Show only first row Show all	>Lus10043272 pacid=23168239 polypeptide=Lus10043272 locus=Lus10043272.g ID=Lus10043272.BGIv1.0 annot-version=v1.0 MKFGKSLSNQIDETLPEWRDKFLSYKDLKKRLKLIGGTDRPAKRPRLDGGDDCSAAFMTEEEIDFINLLEDELEKFNAFFVEKEEEYIIRLKELQDMLVS AEDCNEEIIKIRKEIVDFHGEMVLLENYSALNYTGLAKILKKYDKRTGALIRLPFIQKVLQQPFFTTDLLNKLVKECETMLDRLFPRKMAAMAPSAVAGP SSFDDGDDECCPSTSAAAADNEELAEIEQMDDSLYLKSTKSALRILQEIRSKSSTVSAFSLPPLQIGGLEDSWSNVPILEQAAKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	0	1
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	1.0	0.9931
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	1.7	0.9637
AT1G25550	GARP		myb-like transcription factor ...		Lus10021699 [exp]	2.0	0.9428
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10030095 [exp]	2.0	0.9690
AT3G43110			unknown protein		Lus10020796 [exp]	3.2	0.9391
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10016359 [exp]	3.7	0.9219
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002908 [exp]	4.0	0.9150
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10018364 [exp]	4.2	0.9250
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10031529 [exp]	5.2	0.9038
AT5G20790			unknown protein		Lus10007378 [exp]	5.7	0.8788

Compare expression of checked genes

Lus10043272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.