Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47650 108 / 7e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019417 [exp] 214 / 2e-72 AT3G47650 128 / 2e-38 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10005719 [exp] 123 / 4e-37 AT3G47650 130 / 4e-40 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10030091 [exp] 120 / 7e-36 AT3G47650 129 / 3e-39 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002020 [exp] 91 / 9e-25 AT3G47650 90 / 7e-25 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002906 [exp] 92 / 1e-24 AT3G47650 109 / 1e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068300 [exp] 110 / 6e-32 AT3G47650 140 / 9e-44 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G028500 [exp] 96 / 6e-26 AT3G47650 120 / 4e-36 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043274 pacid=23168425 polypeptide=Lus10043274 locus=Lus10043274.g ID=Lus10043274.BGIv1.0 annot-version=v1.0 ATGGTGGAGGTGTTATCGACAGGACTTATCAGGAATTCAGTTGCTCAAGGGAAAGTCGTAAACAGAGTTTTGCAGACCTCTAGAACCCCAAAGTCTCGGT CTTTAGTGGTCAAGGTCAGTTCTTTCTTCAGCTGTTGTTGCATAATGTGCGTGACTGCTGCAACAGTTGACACTGCAGAAGTGATATTAGAACAGGCAAA GGGCTCGATTTGGGTTTCTGTTGAACAGGCGACAGATGATAAGAAAACCGTGAAACCAAGGAGCATAGTATGTACTGGCTGTGAAGGCAACGGAGTCAAT TCTGTTGACCACTTTAACGGACAGTTTAAAGCTGGTGGATTGTGCTGGTTATGCAGAGGTAAAAGGGAGATGTTGTGTGGGAACTGCAATGGAGCTGGTT TTGTCAGCGGGTTCATGAGCAGTTTCGACGAATGA
AA sequence Show only first row Show all	>Lus10043274 pacid=23168425 polypeptide=Lus10043274 locus=Lus10043274.g ID=Lus10043274.BGIv1.0 annot-version=v1.0 MVEVLSTGLIRNSVAQGKVVNRVLQTSRTPKSRSLVVKVSSFFSCCCIMCVTAATVDTAEVILEQAKGSIWVSVEQATDDKKTVKPRSIVCTGCEGNGVN SVDHFNGQFKAGGLCWLCRGKREMLCGNCNGAGFVSGFMSSFDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10043274 [exp]	0	1
					Lus10040805 [exp]	8.5	0.6683
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10028717 [exp]	13.2	0.6491
AT4G26400			RING/U-box superfamily protein...		Lus10006449 [exp]	16.2	0.6491
AT1G04380			2-oxoglutarate (2OG) and Fe(II...		Lus10009240 [exp]	21.7	0.6111
AT3G19620			Glycosyl hydrolase family prot...		Lus10002127 [exp]	23.3	0.6114
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031236 [exp]	26.2	0.5934
					Lus10003283 [exp]	33.3	0.5567
AT3G58520			Ubiquitin carboxyl-terminal hy...		Lus10000847 [exp]	34.5	0.5291
					Lus10026713 [exp]	34.9	0.5952
AT1G69990			Leucine-rich repeat protein ki...		Lus10041486 [exp]	35.7	0.5916

Compare expression of checked genes

Lus10043274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.