Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26680 419 / 5e-147 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019418 [exp] 554 / 0 AT2G26680 460 / 4e-164 unknown protein Lus10005721 [exp] 485 / 5e-173 AT2G26680 444 / 6e-158 unknown protein Lus10030089 [exp] 432 / 9e-152 AT2G26680 400 / 4e-140 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119800 [exp] 449 / 9e-159 AT2G26680 449 / 4e-160 unknown protein Potri.014G017900 [exp] 446 / 1e-157 AT2G26680 457 / 2e-163 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043275 pacid=23168347 polypeptide=Lus10043275 locus=Lus10043275.g ID=Lus10043275.BGIv1.0 annot-version=v1.0 ATGGACATTAAACGGCAACGGACCACGGCTGCAACTGGATCCCTCTTTAGTTACCCTACTCAACGAACAGCAGCTCTTTCCATATCAACAAAGAATCAAG ATCGTCTCTTTCTTTCTTCATCACTCTTCCCCAGATCCAACGCAAAAACTCTGTTCATTGTTTGTTTCCTTGCTTGTCTACATCTTCCAATGGCAAATGC GTGGAGAAGAGAGGGTAGAAACCCAAAGCTTCTATCAGCAAAGCCACTGATCCTCCTCCTCCTCTCCATCTCCCTCCTCCTCGTCTTCCTTTTCCTCTCA TCTCGTTTCCCATCAAACCCAAATCTAACCTCATCTCTCGCAATCTCCAATCCTCTCTCCAAACCCTACCCAATCCCTCCTTTCAACTGCTTCAATTCCC CACAAGCTCACCCTGTAGTAGCCAATTTGGTGGAAAATGTTCAATACCCTTTCCTCTTCTCCCTGTCCGATTTCGGATCTTTGCCCGATAAGCCTCACAA GAACATCGTAAGGTTGCTGAAAGGGAAGCTTTTCCGGAAGCCTGATATCTCCGCTACGATCCAGGGGATTCTCCAAGGTAAGAAGAGTGATGACGGGGTA GTTGTGGATGTGGGTGCTAATGTGGGAATGGCCAGCTTTGCAGCTGCGGTTATGGGGTTCAAGGTGTTTGCTTTTGAGCCTGTTATGGAGAATCTGCAGA GGATCTGTGATGGGATTTGGTTCAATCGAGTTGGGGAGCTGGTTACTGTTTTTGATGCTGCTGCTTCTGATCGGTTTGGGAATATCACTTTCCACAAGTT GGTTGGCCGGCTTGACAACAGTGCCATATCAGCCACCGGTGCAAAACTAGCATTCAAGTCCAACGAGGAAGTAGCAGTTCAAGTTCAGACGATACCCTTG GATGATGTGATCCCCGATTCACAGCCCGTGCTTCTGATCAAAATCGATGTGCAGGGGTGGGAATATCATGTATTGAAAGGAGCATCGAAATTGCTCTCTA GAGCAAAGGGCGAAGCCCCCTACGTCATCTACGAAGAAGACGAGCGATTGCTCCAAGCTAGCAATAGCAGTGCCAAAGAGATCCGTGATTTCCTGCACAC TGTTGGCTACCATCACTGCACCCAGCATGGCACTGACGCGCACTGTACTAAGAAATGA
AA sequence Show only first row Show all	>Lus10043275 pacid=23168347 polypeptide=Lus10043275 locus=Lus10043275.g ID=Lus10043275.BGIv1.0 annot-version=v1.0 MDIKRQRTTAATGSLFSYPTQRTAALSISTKNQDRLFLSSSLFPRSNAKTLFIVCFLACLHLPMANAWRREGRNPKLLSAKPLILLLLSISLLLVFLFLS SRFPSNPNLTSSLAISNPLSKPYPIPPFNCFNSPQAHPVVANLVENVQYPFLFSLSDFGSLPDKPHKNIVRLLKGKLFRKPDISATIQGILQGKKSDDGV VVDVGANVGMASFAAAVMGFKVFAFEPVMENLQRICDGIWFNRVGELVTVFDAAASDRFGNITFHKLVGRLDNSAISATGAKLAFKSNEEVAVQVQTIPL DDVIPDSQPVLLIKIDVQGWEYHVLKGASKLLSRAKGEAPYVIYEEDERLLQASNSSAKEIRDFLHTVGYHHCTQHGTDAHCTKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26680			unknown protein		Lus10043275 [exp]	0	1
AT2G26680			unknown protein		Lus10019418 [exp]	1.4	0.9093
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	1.4	0.9218
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	2.4	0.9078
AT1G08760			Plant protein of unknown funct...		Lus10026806 [exp]	4.5	0.8933
AT1G30630			Coatomer epsilon subunit (.1)		Lus10003497 [exp]	6.2	0.8725
AT1G80690			PPPDE putative thiol peptidase...		Lus10042454 [exp]	6.3	0.8797
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10011846 [exp]	6.3	0.8741
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10028548 [exp]	7.3	0.8753
AT3G11950		ATHST	TRAF-like superfamily protein ...		Lus10029325 [exp]	7.3	0.8882
AT1G64650			Major facilitator superfamily ...		Lus10033228 [exp]	7.4	0.8737

Compare expression of checked genes

Lus10043275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.