Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55190 401 / 4e-142 RAN3, ATRAN3 RAN GTPase 3 (.1) AT5G20010 396 / 5e-140 ATRAN1, RAN-1 ARABIDOPSIS THALIANA RAS-RELATED NUCLEAR PROTEIN, RAS-related nuclear protein-1 (.1) AT5G20020 385 / 7e-136 RAN2 RAS-related GTP-binding nuclear protein 2 (.1) AT5G55080 287 / 6e-97 ATRAN4 ras-related nuclear protein 4 (.1) AT5G20160 198 / 2e-63 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) AT4G22380 197 / 3e-63 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT4G12600 193 / 2e-61 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) AT4G39890 100 / 7e-25 AtRABH1c RAB GTPase homolog H1C (.1) AT5G45750 97 / 2e-23 AtRABA1c RAB GTPase homolog A1C (.1) AT4G18430 97 / 2e-23 AtRABA1e RAB GTPase homolog A1E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019420 [exp] 625 / 0 AT5G55190 443 / 8e-159 RAN GTPase 3 (.1) Lus10019441 [exp] 410 / 3e-145 AT5G55190 434 / 2e-157 RAN GTPase 3 (.1) Lus10043297 [exp] 404 / 5e-143 AT5G55190 430 / 1e-155 RAN GTPase 3 (.1) Lus10017031 [exp] 212 / 1e-68 AT4G22380 220 / 2e-75 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10015295 [exp] 206 / 4e-64 AT4G22380 217 / 7e-72 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10025435 [exp] 206 / 1e-63 AT4G22380 203 / 7e-66 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10040255 [exp] 97 / 2e-23 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10004687 [exp] 97 / 2e-23 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10043349 [exp] 97 / 2e-23 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250300 [exp] 402 / 2e-142 AT5G55190 424 / 4e-153 RAN GTPase 3 (.1) Potri.018G030900 [exp] 399 / 3e-141 AT5G55190 424 / 3e-153 RAN GTPase 3 (.1) Potri.018G030700 [exp] 399 / 3e-141 AT5G55190 424 / 3e-153 RAN GTPase 3 (.1) Potri.006G250400 [exp] 386 / 6e-136 AT5G55190 411 / 3e-148 RAN GTPase 3 (.1) Potri.013G116800 [exp] 202 / 4e-65 AT4G12600 216 / 3e-74 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.019G087100 [exp] 199 / 7e-64 AT4G12600 213 / 9e-73 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.008G061300 [exp] 99 / 4e-24 AT1G07410 367 / 9e-131 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.019G092500 [exp] 98 / 1e-23 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.013G123600 [exp] 97 / 1e-23 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.010G197200 [exp] 97 / 2e-23 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10043276 pacid=23168094 polypeptide=Lus10043276 locus=Lus10043276.g ID=Lus10043276.BGIv1.0 annot-version=v1.0 ATGCCATTGCTGATTGTTGTCTATGGCTGTGTTTATCTGATTGCTCGTGCGCAGACTGGTGAAGCAGTAAACCCGAAAGCCTACCCGCTCGCTGATTCTC AGCTGACAATCACTATTCTCGACCTTGTTCAACAAGCTGCTAACTACAAGCAGCTCAAGAAGGGAGCAAATGAAGCTACCAAGACACTGAACAGGGGTAT CTCTGAGTTCGTTGTCATGGCTGCCGATACTGAGCCCCTCGAGATTCTTCTCCACCTTCCATTGCTTGCTGAGGACAAGAATGTGCCATATGTGTTTGTT CCTTCAAAGCAAGCACTTGGCAGAGCTTGCGGTGTCACAAGACCTGTCATCTCTTGTTCCGTGACAACGAACGAAGGAAGTCAATTGAAGTCTCAGATAC AACAACTCAAGGCTCTGCCGAATCAGCAAGTAGTTGACTACCCGAGCTTCAAGCTCGTTATTGTTGGCGATGGAGGGACTGGGAAAACCACATTCGTCAA GAGACATTTGACTGGAGAGTTTGAGAAGAAATATGAACCAACCATTGGCGTGGAAGTCCATCCTTTGGATTTCACTACCAACTGTGGGAAGATCCGATTC TATTGCTGGGACACAGCTGGACAAGAGAAGTTTGGCGGACTCAGAGATGGATACTACATCCATGGTCAATGTGCGATTATAATGTTTGATGTTACGGCAA GATTGACCTACAAGAATGTTCCTACATGGCACCGTGATCTCTGCAGGGTTTGTGAAAATATACCCATTGTCCTCTGTGGAAACAAGGTTGATGTGAAAAA CAGGCAGGTTAAGGCTAAGCAGGTTACTTTCCCCAGGAAGGAAAATCTCCAGTGCTCTGAGATATATTCCAAGAGCAACTACAACTTTGAGAAGCCTTTC CTCTACCTTGCTCGCAAGCTTGCTGGGGACCCAAACCTTCACTTTGTGGAGGCAGTTGCCCTGCGTCCTCCAGAGGTTCAAATTGACATGGCTACACAGC AACAACATGAACAAGAGCTGGCACAAGCTGCTAACCAGCCTCTTCCTGATGACGATGATGATGCATTCGAGTAA
AA sequence Show only first row Show all	>Lus10043276 pacid=23168094 polypeptide=Lus10043276 locus=Lus10043276.g ID=Lus10043276.BGIv1.0 annot-version=v1.0 MPLLIVVYGCVYLIARAQTGEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFV PSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLKALPNQQVVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRF YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFPRKENLQCSEIYSKSNYNFEKPF LYLARKLAGDPNLHFVEAVALRPPEVQIDMATQQQHEQELAQAANQPLPDDDDDAFE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043276 [exp]	0	1
AT3G55605			Mitochondrial glycoprotein fam...		Lus10030157 [exp]	3.5	0.8432
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	4.0	0.8380
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10023167 [exp]	4.2	0.8017
AT1G62730			Terpenoid synthases superfamil...		Lus10032248 [exp]	6.3	0.8289
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003324 [exp]	6.9	0.8312
AT1G62730			Terpenoid synthases superfamil...		Lus10024610 [exp]	7.1	0.8241
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	8.1	0.8349
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019420 [exp]	8.8	0.7916
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018394 [exp]	9.6	0.8362
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10016511 [exp]	10.8	0.8167

Compare expression of checked genes

Lus10043276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.