Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57340 342 / 3e-114 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT5G05750 241 / 3e-76 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G49060 211 / 8e-64 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT2G20560 76 / 1e-14 DNAJ heat shock family protein (.1) AT5G25530 74 / 3e-14 DNAJ heat shock family protein (.1) AT2G22360 75 / 4e-14 DNAJ heat shock family protein (.1) AT4G28480 70 / 4e-13 DNAJ heat shock family protein (.1.2) AT1G59980 71 / 5e-13 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G59725 70 / 8e-13 DNAJ heat shock family protein (.1) AT3G06778 68 / 1e-12 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019421 [exp] 595 / 0 AT3G57340 408 / 3e-142 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10030079 [exp] 464 / 3e-162 AT3G57340 420 / 6e-147 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10006515 [exp] 196 / 2e-58 AT5G49060 300 / 8e-101 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10037502 [exp] 152 / 1e-41 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10027634 [exp] 82 / 3e-16 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10017687 [exp] 80 / 5e-16 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10011934 [exp] 80 / 9e-16 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10021961 [exp] 78 / 2e-15 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10041254 [exp] 77 / 3e-15 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153700 [exp] 402 / 2e-138 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Potri.010G013200 [exp] 200 / 2e-59 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.009G065500 [exp] 78 / 4e-15 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.018G034600 [exp] 75 / 1e-14 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 73 / 5e-14 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.016G120000 [exp] 74 / 1e-13 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.006G246700 [exp] 71 / 3e-13 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 71 / 3e-13 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.001G271300 [exp] 72 / 4e-13 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.007G135700 [exp] 70 / 6e-13 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF09320 [flax] [poplar] DUF1977 Domain of unknown function (DUF1977)
Representative CDS sequence Show only first row Show all	>Lus10043277 pacid=23168050 polypeptide=Lus10043277 locus=Lus10043277.g ID=Lus10043277.BGIv1.0 annot-version=v1.0 ATGTGGAGGGGTGGTGGTGTTCGGCATGAGAGGTCGAGAGTCGGAGAGGGATGTGTGGGGGATGGCGGCCGTTTGGAGAGATGGTGGTTTCATGGTGCTC CTGAAATTGCGATTAGGCTAGTCGGCGCTGATCTTACCGGTTTCGCGACGTTACCGTTGCCGTCGGACGAGGCCGTCGGCCCCATTCATCGTTACCGACT ACGGTGTACCGTCGTTGCCACTGGGTCTTCTCGTGCTGGCCGGCCTTCGAGCAATGGGTTCATCCCCTCGGCTTTCCAGCCAATTCTGGCATCTTGCCTG CTTAATCTCAGTAGATTTCCTTCAAGTTACCTGATGGTGCATTTGTCTGCCGAGCAAATGGACGGGAACAAAGACGACGCGTTAAAATGCTTGAGAATCG GCAAGGAAGCACTCACATCGGGGGACAGGGCTCGCGCTGTGAAATTCTTCTACAAAGCTCGCCGTCTAGATCCAACTCTCCCGATCGAAGATCTGATCGC GGAGACGGCGAAGGAGAATCAGTCGTCGTCGTCTGATCAGACATCTGGGAAGGCTAACGGATCGGCAAGTAATGAATCGAAGCTTCGTCATCGAGCTAAC GGAACAGCGGCGGCGTCTCCTATTGCTGCCGCCGGTGGTGTTGCTGGCTCGGCTTCGTCATCATCGCCTAATTATACTGAGGATCAAGTCAAGATGGTGA GACAGATTAATAAGAAGAAGGATTATTATGAAATTTTGGGAGTGGAGAAGAGCTGTACTGTTGATGATGTTCGTAAGGCGTATAGGAAGTTGTCATTGAA AGTTCATCCTGATAAGAACCCAGCACCAGGAGCTGAGGAGGCGTTTAAGTCGGTGTCTAAAGCGTTCCAGTGTCTGAGCAATGAAGAGAGTAGGAATAAA TATGATGTGACTGGGAGTGAAGAGCCTGTTATTGAGAGACGAGCTGCTAGCCGTCATGGTGGAGGAGGAATGCACAATGGGTTTTATGATGAGTTTGATG CTGACGAGATATTCAGGCAGTTCTTCTATGGAGGAATGTCTCCTGCAGCTACACAGTTCAGGACTTTCAACTTTGGGGGTGGGATGGGAGGACCTAGACC GGGTGACAATGGATCCGGGTTCAACGCTCGTGCGTTGATTCAGCTGCTGCCTGTTCTGTTGATTGTGCTTTTCAGTTTACTGCCATCTTCGGATCCGATT TACACACTCTCTCGGTCATATCCTTATGAACATAGGTACACCACGGAGAAAGGGGTTAATTTCTATGTCAAGAGTGGTAACAGATTTGAGCAGGATCATC CAATTGGTAGCCAGAACAGGATAGCGGTTGAAGAAAAAGTGGAGAGGGACTACGTTTCACTACTTGCTCAGAATTGCAGGTTTGAGTTGCAAAGGCAGCA GTGGGGCTTTGTACGGAAGACTCCACACTGCGAGATGCTGCAGCAGTATCAGTCTGGGGAAAGTGCTGCGTGA
AA sequence Show only first row Show all	>Lus10043277 pacid=23168050 polypeptide=Lus10043277 locus=Lus10043277.g ID=Lus10043277.BGIv1.0 annot-version=v1.0 MWRGGGVRHERSRVGEGCVGDGGRLERWWFHGAPEIAIRLVGADLTGFATLPLPSDEAVGPIHRYRLRCTVVATGSSRAGRPSSNGFIPSAFQPILASCL LNLSRFPSSYLMVHLSAEQMDGNKDDALKCLRIGKEALTSGDRARAVKFFYKARRLDPTLPIEDLIAETAKENQSSSSDQTSGKANGSASNESKLRHRAN GTAAASPIAAAGGVAGSASSSSPNYTEDQVKMVRQINKKKDYYEILGVEKSCTVDDVRKAYRKLSLKVHPDKNPAPGAEEAFKSVSKAFQCLSNEESRNK YDVTGSEEPVIERRAASRHGGGGMHNGFYDEFDADEIFRQFFYGGMSPAATQFRTFNFGGGMGGPRPGDNGSGFNARALIQLLPVLLIVLFSLLPSSDPI YTLSRSYPYEHRYTTEKGVNFYVKSGNRFEQDHPIGSQNRIAVEEKVERDYVSLLAQNCRFELQRQQWGFVRKTPHCEMLQQYQSGESAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	0	1
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	1.7	0.9216
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	2.0	0.9026
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	2.4	0.9146
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	2.8	0.9163
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	3.0	0.8932
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	4.5	0.9018
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	4.7	0.8925
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	5.5	0.8929
AT1G11050			Protein kinase superfamily pro...		Lus10001295 [exp]	6.5	0.8875
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	6.5	0.8992

Compare expression of checked genes

Lus10043277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.