Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37990 341 / 3e-117 ribosome biogenesis regulatory protein (RRS1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019422 [exp] 476 / 7e-170 AT2G37990 403 / 3e-141 ribosome biogenesis regulatory protein (RRS1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G231000 [exp] 372 / 8e-129 AT2G37990 324 / 6e-110 ribosome biogenesis regulatory protein (RRS1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04939 [flax] [poplar] RRS1 Ribosome biogenesis regulatory protein (RRS1)
Representative CDS sequence Show only first row Show all	>Lus10043278 pacid=23168257 polypeptide=Lus10043278 locus=Lus10043278.g ID=Lus10043278.BGIv1.0 annot-version=v1.0 ATGGAGATCCAGAACCAATACCAGGTTGACCTCGGCCATCTGATGGCGTTCGACCCATACAACTTCCCTTCTTACCCTAATGCCAGGGAGGAATTGGTGA AGGAGTGTTTAAAGAAGGGGACTGAGCTGGTTCAAGCCATTGCTGATTCCCTTTTCAACTTGCCATCTACGGATGATATTCAGGGCCCTTTAGTAAAGCT GCCTCCTCCCATCACTAAGCTTCCCAGAGAGAAGCATGTGCCTGTGGCTAAACCTCAAACCAAATGGCAAAAGTTTGCCCAAGATAAAGGAATACAGAAA CGTAAAAAGGACAAGGTTATATGGGATGAGCAAACTAACCAGTGGAAACGCAGATATGGATATGATCGTGTTAATGATGATGCTGATGTCCCAATCATTG AGGGCAAGATGACTGATGAACCTGGAGGTGATCCTTTTGCCAAGAGGATAGCAGATAAGAAGAAAAGAGTTGGGAAGCAAGAGAATAATCGTTTGCAAAA TTTGAAAGAAGCTGCAAAAGTTAATGCTTTGCCAAGGTATTCACTTTCGTGCTTTCCTCCAAAAATTACAAAAGACGAACTGGGAAATGTTGCTGGACTT GCAGGAACAGCCACAGCCAGCGGTGGAAAGTTCGATAAGAAGGTACGAGGTGAAAAGCCCGCCAAACACGAAGGAAAATACCGCAAGTTCTTACCAGCTG CTGAAGGCTCAGGAATGGGCAACCGAGAGAAAGAACAAACAGATAAAGTGTTGAGCAAACTAATGGCGAAAAGCTCGCATGAGATTCTCAACGTGAACAA AGCCATTAACATGTACAATGGGAAGAACGAGAAGAAAGGGAGAAGGGATAATAAAGGAGGAGGGAAACCAAGTGGCAAACCCAAATCTCCTTACAGCTCT AGTAAGTTGAAACCAAGTGGCAAACCCATGAAAGGTGGCAAGAACAACAAACCGAACAATAAGTTTTCCAAAGGTGGATCAAACAGAGGGAGGGCTGAAT AA
AA sequence Show only first row Show all	>Lus10043278 pacid=23168257 polypeptide=Lus10043278 locus=Lus10043278.g ID=Lus10043278.BGIv1.0 annot-version=v1.0 MEIQNQYQVDLGHLMAFDPYNFPSYPNAREELVKECLKKGTELVQAIADSLFNLPSTDDIQGPLVKLPPPITKLPREKHVPVAKPQTKWQKFAQDKGIQK RKKDKVIWDEQTNQWKRRYGYDRVNDDADVPIIEGKMTDEPGGDPFAKRIADKKKRVGKQENNRLQNLKEAAKVNALPRYSLSCFPPKITKDELGNVAGL AGTATASGGKFDKKVRGEKPAKHEGKYRKFLPAAEGSGMGNREKEQTDKVLSKLMAKSSHEILNVNKAINMYNGKNEKKGRRDNKGGGKPSGKPKSPYSS SKLKPSGKPMKGGKNNKPNNKFSKGGSNRGRAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37990			ribosome biogenesis regulatory...		Lus10043278 [exp]	0	1
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10029026 [exp]	1.0	0.9595
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10022252 [exp]	5.5	0.8960
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	5.7	0.9305
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10001681 [exp]	7.9	0.9383
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10040479 [exp]	8.4	0.9082
AT2G37990			ribosome biogenesis regulatory...		Lus10019422 [exp]	8.5	0.8999
AT1G25260			Ribosomal protein L10 family p...		Lus10043280 [exp]	12.2	0.9109
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	12.8	0.9263
AT4G29410			Ribosomal L28e protein family ...		Lus10032699 [exp]	13.2	0.9238
AT2G24990			Serine/threonine-protein kinas...		Lus10002728 [exp]	15.0	0.9080

Compare expression of checked genes

Lus10043278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.