Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25260 352 / 2e-124 Ribosomal protein L10 family protein (.1) AT3G11250 61 / 8e-11 Ribosomal protein L10 family protein (.1) AT3G09200 61 / 8e-11 Ribosomal protein L10 family protein (.1.2) AT2G40010 58 / 8e-10 Ribosomal protein L10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030073 [exp] 435 / 2e-157 AT1G25260 343 / 5e-121 Ribosomal protein L10 family protein (.1) Lus10019424 [exp] 438 / 2e-151 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10001072 [exp] 166 / 5e-53 AT1G25260 122 / 5e-36 Ribosomal protein L10 family protein (.1) Lus10014841 [exp] 57 / 3e-09 AT3G11250 489 / 6e-176 Ribosomal protein L10 family protein (.1) Lus10009887 [exp] 56 / 6e-09 AT3G11250 491 / 7e-176 Ribosomal protein L10 family protein (.1) Lus10009447 [exp] 55 / 8e-09 AT3G09200 431 / 1e-153 Ribosomal protein L10 family protein (.1.2) Lus10028276 [exp] 55 / 1e-08 AT2G40010 486 / 1e-174 Ribosomal protein L10 family protein (.1) Lus10040214 [exp] 55 / 1e-08 AT2G40010 484 / 6e-174 Ribosomal protein L10 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156300 [exp] 396 / 4e-142 AT1G25260 353 / 5e-125 Ribosomal protein L10 family protein (.1) Potri.001G460100 [exp] 392 / 2e-140 AT1G25260 352 / 1e-124 Ribosomal protein L10 family protein (.1) Potri.010G191200 [exp] 57 / 2e-09 AT3G09200 505 / 0.0 Ribosomal protein L10 family protein (.1.2) Potri.008G066300 [exp] 55 / 7e-09 AT2G40010 510 / 0.0 Ribosomal protein L10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00466 [flax] [poplar] Ribosomal_L10 Ribosomal protein L10
Representative CDS sequence Show only first row Show all	>Lus10043280 pacid=23167957 polypeptide=Lus10043280 locus=Lus10043280.g ID=Lus10043280.BGIv1.0 annot-version=v1.0 ATGCCCAAGTCAAAGCGTAATCGTGCAGTTACTCTGTCGAAGACGAAGAAGAAGGGAAGGGAACATAAAGAAGTCATAGTAAACTCGATAAGGGATGCTG TGGAGAAATACGCTTCCGTTTACGTGTTTGGTTTCGAGAACATGCGAAATCTCAAGTTCAAGGAATTTCGAGAGCAGCTTAAGTCCAGCAGCAGATTCTT TCTCGGGTCAAACAAAGTGATGCAAGTTGCTCTTGGTCGATCTGCTGCTGATGAGCTTAGACCAGGGCTCCGCAAGGTGTCTAAGCTTCTGCATGGAGAT TCTGGTCTTGTTTGTACTAACTTGCCTAAGGAGGAAGTGGAAAGGTTATTCCGCGAATATGAAGATTATGACTTTGCACGGACTGGTTGTAAGGCCCCTG AAAAGGTGGAACTCAACGAAGGACCTCTGGAGCAGTTTACTCATGAAATGGAGCCTTTTCTGCGTAAACAAGGGTTGCCTGTTCGCTTAAACAAGGGTGC TGTGGAACTTATTTCGGACTTTGTTGTCTGTGAAGAAGGAAAGCCTTTGTCACCTGAATCTGCTCGGATACTGAGATTGTTAGGGATCAAGATGGCAACC TTCCGGCTGAACTTAATCTGCAGATGGAGCTCTGAAGATTTCGAGCTTTACAGAGAGGGACTTGATGAAGCTTCAGACATTGAATCAGCTTGA
AA sequence Show only first row Show all	>Lus10043280 pacid=23167957 polypeptide=Lus10043280 locus=Lus10043280.g ID=Lus10043280.BGIv1.0 annot-version=v1.0 MPKSKRNRAVTLSKTKKKGREHKEVIVNSIRDAVEKYASVYVFGFENMRNLKFKEFREQLKSSSRFFLGSNKVMQVALGRSAADELRPGLRKVSKLLHGD SGLVCTNLPKEEVERLFREYEDYDFARTGCKAPEKVELNEGPLEQFTHEMEPFLRKQGLPVRLNKGAVELISDFVVCEEGKPLSPESARILRLLGIKMAT FRLNLICRWSSEDFELYREGLDEASDIESA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25260			Ribosomal protein L10 family p...		Lus10043280 [exp]	0	1
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10040040 [exp]	1.0	0.9415
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Lus10001335 [exp]	3.5	0.9310
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10032123 [exp]	5.1	0.8953
AT1G07770		RPS15A	ribosomal protein S15A (.1.2)		Lus10043001 [exp]	5.5	0.9312
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10022057 [exp]	6.2	0.9409
AT4G11120			translation elongation factor ...		Lus10012296 [exp]	6.4	0.8799
AT2G24990			Serine/threonine-protein kinas...		Lus10002728 [exp]	6.9	0.9235
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10038695 [exp]	6.9	0.9252
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10027668 [exp]	7.1	0.9295
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	8.5	0.9169

Compare expression of checked genes

Lus10043280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.