Plant FIBer expression Database

Lus10043283 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20120 187 / 9e-61 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019426
[exp]
189 / 5e-60 AT5G20120 110 / 2e-29 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G066700
[exp]
219 / 5e-73 AT5G20120 236 / 4e-80 unknown protein
PFAM info
Representative CDS sequence
>Lus10043283 pacid=23168019 polypeptide=Lus10043283 locus=Lus10043283.g ID=Lus10043283.BGIv1.0 annot-version=v1.0
ATGTCTGGTGGAACACCGAGAGGGGGATACGTGAGGCAGAGACATAGCCAAGGAGGCTATGGATCGAGCGGTGATGATCTGGAGGATGATGCATGTTCGA
GGCCACACCAACATTACTTCTCTCCCACTCCGCCACGGGCTAGGTCTTGGGTGGTGATTTTGGAGAACCTGGTTTGGATTGCTTCTGCCATTTTCGTGGT
TTACTATGGTGACAGACATTCCAATTTGGTGTATCTGCTGTGGCACGATGGTAGAGTTAGAAGAGTGCCTTTTTACTTGGGGATGGCAGGTGTTGGTTTC
AATGTACTCATCTTTTTGTACACGAGTTTATTCGCTTGGAGTGTACGGAGATTTGACGAGAAATGGGAATTGTCAAGTATAGCTGCTTTACCATGGGTTA
CTGTATTGGGCCTCCTCTCCTTCTGCTTGTTCTGTATTGCTCTGTGGCCAATATGGAGCTTCTTGACGGTTCCACTTCTGCTGAAAGCTGACTGGGGGAT
CAACCCAGTCAGTTGTTATACTGATAGCATTGGCACATACATGAACTTGCAAGGTCAGCCTTGTGATTTAAGCGCAGGATTGGAACAGCAGGGCTTGATG
GAGAATTAA
AA sequence
>Lus10043283 pacid=23168019 polypeptide=Lus10043283 locus=Lus10043283.g ID=Lus10043283.BGIv1.0 annot-version=v1.0
MSGGTPRGGYVRQRHSQGGYGSSGDDLEDDACSRPHQHYFSPTPPRARSWVVILENLVWIASAIFVVYYGDRHSNLVYLLWHDGRVRRVPFYLGMAGVGF
NVLIFLYTSLFAWSVRRFDEKWELSSIAALPWVTVLGLLSFCLFCIALWPIWSFLTVPLLLKADWGINPVSCYTDSIGTYMNLQGQPCDLSAGLEQQGLM
EN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G20120 unknown protein Lus10043283
[exp]
0 1
AT5G20120 unknown protein Lus10019426
[exp]
1.0 0.8826
AT4G09810 Nucleotide-sugar transporter f... Lus10020837
[exp]
6.6 0.8123
AT2G17800 ARAC1, ATGP2, A... RHO-RELATED GTPASES FROM PLANT... Lus10041881
[exp]
11.1 0.8408
AT2G25800 Protein of unknown function (D... Lus10013391
[exp]
14.4 0.8185
AT2G45140 PVA12 plant VAP homolog 12 (.1) Lus10000032
[exp]
16.9 0.8106
AT5G62440 Protein of unknown function (D... Lus10023594
[exp]
19.1 0.7915
AT3G53380 Concanavalin A-like lectin pro... Lus10026493
[exp]
20.5 0.8053
AT1G29690 CAD1 constitutively activated cell ... Lus10025153
[exp]
24.9 0.7960
AT4G31540 ATEXO70G1 exocyst subunit exo70 family p... Lus10026230
[exp]
27.7 0.7866
AT2G33390 unknown protein Lus10023738
[exp]
32.6 0.7496

Lus10043283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.