Plant FIBer expression Database

Lus10043284 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20170 713 / 0 RNA polymerase II transcription mediators (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019427
[exp]
1214 / 0 AT5G20170 716 / 0.0 RNA polymerase II transcription mediators (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G057100
[exp]
895 / 0 AT5G20170 745 / 0.0 RNA polymerase II transcription mediators (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10156 Med17 Subunit 17 of Mediator complex
Representative CDS sequence
>Lus10043284 pacid=23168041 polypeptide=Lus10043284 locus=Lus10043284.g ID=Lus10043284.BGIv1.0 annot-version=v1.0
ATGGACGGGAACTTAGAAATCTCCATCGACAAGCTCCCTGTGAAGCGATTGGAGTCCATTGAGGAAAATGGCGCCGAACGCTTTCCTACTGATGTTGGAT
ACGACGAGAAGCGAGTTTCGCTAATTCGTAGAGTAGATTTTGCGTGGGCGTTGGAGAGGGAGGAGGACGAGAAGAAGAAGAAGCAGAAGAGTAGTAAGGA
GAGCGCTTCAGCTACACAATGGCCTTGGCAGGGAATGGTGGAGAATTTGCAATTGGCTCATCAGGAGCTATCCGTCATCATAGATCTCATTCAAACTGTG
GAAGCTAACGATGCTGTAACAGTAGCTGGTATGACCAGGCCGAAACTGTTGCCTAATGAGCACCTGGCGGACCTTGCTGTATCTACGGCAACCAAGCTAC
AATGCTACCGACAACTCGGAAAATATTTTAAGCAGTCTGCGAAAGCTTTGGATCAACAAGTTGCACGGGAAGCAAGATTTTATGGAGCTCTAATCAGATT
GCAGCAAAACTGGAAAGTTAAACGGCTGAGACTGGCTCCACTTACTCCTGGCAATGAAGGTTTCACTTTTGACCTTTACGACAACTCATTATATGATCCA
TCAATGGTTAGGCCTACCTCTCTGTCCACCATTCGGATTGATCGTGATCCAGCTGGCATGCTTGCTATAAACTTGCCTCCGAAGTCTCTTCATTCGCTTC
ATTTTGGTATTCTTGGTGTACACTCTAATGCCCGTAGTAAAACATCCATTAAAGGAAAAAGCACTTCTTCAATTGGACGTGTATCAAAAGAAAATGAGAA
AGAACAACTTGATGATAATGGGAGTGTGAAAGCAACACACTTATTGCTTCGTGAAGTTCATCAAGCAATCTTCGACGAGCAGGTGTTTGATTTAGTGAAC
CGTGAAGCAGTTAACCAATCTGCAGGGGTCAACATAACTGGAATACGAGAAAATTATCTACAGCTAAACATTGGTCCGGGAGCCTCCGTATTTGTATCTG
TGACACCTTGTGATCAGGATGAATCAACTGTTGATGGTAGAATTCCCAAGGACTCAATATCTACAGCCTTACCTTTGGATTTGAGTGACGGAGCAAGGTT
GATAAAAGAGAGCTCAGGCTTCCCAAATTCTATCAGTTACGATATATTTCTACGACAGATATTCCACGAGCATCTCATTGAAAAATCGAAGGAAAAACCG
GTTCCCAAAGGCACTCACCTAGCTAGTGTCCGGCCACAGGAAGGATCCAGTCTTCTGAGTCACTTCTGCTTATCTCTGGCTCATAGAATAATTTCAAACA
AAGTTCTTATCGAGCTAGAAAAAGTGGTTGGCCGAGTCCCGTATCTACATTTGATATCTCATCCCACTTGGCATTCGAGGTCATCTTCGTGGACGGTCTC
CATGCGAGTGCCGCAGACAGTGCTGCGTGCAAACTCTCAACTACAGTCATCGGACATCCAAAGCATGAAGAAGTCTACCAAATCAGAGTTCCGGAATAAG
GTAATGGTAAATGATGATAGCATACATGTCGAAGCAGAGGGTGCTCCAAATGTTGTTGGCCTCTTCAATGGGAGTTCTAAAGACAGATGTATCACCAACA
AATATGATTGTGATTTGGCGGGTCTTCCTGTCATAATTCTGCAGCAGGTTGCAAGCCAGGTCATCCGATGGTTGCACGGGGAAGCTCTAGCGGTGGGAAT
GAAAGCAAGCAGAGATTTCTTGTGTTTGTCTTTCGAGTTGGATCAAGGGGAGATACTTAGCCTTGTGGCGCACGTCGATTCAGACGATACGGAGGGATGT
ATCTCGTGGTGGTTCGTAATGGAAGACGGTGTTGCAGAAGAGCGAAAACTCTATGCAGATGGTGGAGCAGAAGATGGTTCGTCTGAGTACAGGAAGTTCT
TAGGGTATCTAAGCCTGGATGTGTTGCATTCGACGCTAATGGACTTGGTGACTTTGTGCAGTGGAGGTGGAAGCCATAGATAA
AA sequence
>Lus10043284 pacid=23168041 polypeptide=Lus10043284 locus=Lus10043284.g ID=Lus10043284.BGIv1.0 annot-version=v1.0
MDGNLEISIDKLPVKRLESIEENGAERFPTDVGYDEKRVSLIRRVDFAWALEREEDEKKKKQKSSKESASATQWPWQGMVENLQLAHQELSVIIDLIQTV
EANDAVTVAGMTRPKLLPNEHLADLAVSTATKLQCYRQLGKYFKQSAKALDQQVAREARFYGALIRLQQNWKVKRLRLAPLTPGNEGFTFDLYDNSLYDP
SMVRPTSLSTIRIDRDPAGMLAINLPPKSLHSLHFGILGVHSNARSKTSIKGKSTSSIGRVSKENEKEQLDDNGSVKATHLLLREVHQAIFDEQVFDLVN
REAVNQSAGVNITGIRENYLQLNIGPGASVFVSVTPCDQDESTVDGRIPKDSISTALPLDLSDGARLIKESSGFPNSISYDIFLRQIFHEHLIEKSKEKP
VPKGTHLASVRPQEGSSLLSHFCLSLAHRIISNKVLIELEKVVGRVPYLHLISHPTWHSRSSSWTVSMRVPQTVLRANSQLQSSDIQSMKKSTKSEFRNK
VMVNDDSIHVEAEGAPNVVGLFNGSSKDRCITNKYDCDLAGLPVIILQQVASQVIRWLHGEALAVGMKASRDFLCLSFELDQGEILSLVAHVDSDDTEGC
ISWWFVMEDGVAEERKLYADGGAEDGSSEYRKFLGYLSLDVLHSTLMDLVTLCSGGGSHR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G20170 RNA polymerase II transcriptio... Lus10043284
[exp]
0 1
AT3G12280 RB1, RBL1, RBR1... RETINOBLASTOMA 1, RETINOBLASTO... Lus10008667
[exp]
4.1 0.8660
AT3G48150 CDC23, APC8 anaphase-promoting complex sub... Lus10004242
[exp]
6.9 0.8316
AT3G18240 Ribosomal protein S24/S35, mit... Lus10022237
[exp]
6.9 0.8013
AT3G18640 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10020889
[exp]
7.1 0.8356
AT1G29320 Transducin/WD40 repeat-like su... Lus10023861
[exp]
7.7 0.8389
AT5G40340 Tudor/PWWP/MBT superfamily pro... Lus10014546
[exp]
10.0 0.8290
AT1G73720 SMU1 SUPPRESSORS OF MEC-8 AND UNC-5... Lus10038425
[exp]
10.4 0.8556
AT5G07670 RNI-like superfamily protein (... Lus10038927
[exp]
12.0 0.8346
AT3G24440 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, ... Lus10019393
[exp]
12.4 0.8325
AT1G09770 MYB ATCDC5, AtMYBCD... ARABIDOPSIS THALIANA MYB DOMAI... Lus10034133
[exp]
15.6 0.8400

Lus10043284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.