Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19360 283 / 2e-93 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT1G32360 154 / 1e-43 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G35430 98 / 1e-23 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G68200 49 / 2e-06 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G12130 44 / 0.0001 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT5G06770 42 / 0.0003 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019431 [exp] 560 / 0 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1) Lus10004573 [exp] 162 / 5e-47 AT1G32360 342 / 1e-116 Zinc finger (CCCH-type) family protein (.1) Lus10000486 [exp] 160 / 2e-46 AT1G32360 337 / 6e-115 Zinc finger (CCCH-type) family protein (.1) Lus10016272 [exp] 57 / 3e-09 AT3G12130 229 / 5e-75 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10004183 [exp] 52 / 2e-07 AT5G06770 261 / 8e-86 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10021043 [exp] 49 / 2e-06 AT5G06770 262 / 1e-87 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012017 [exp] 45 / 2e-05 AT3G12130 186 / 8e-60 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012016 [exp] 42 / 3e-05 AT3G12130 73 / 2e-17 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10035256 [exp] 44 / 8e-05 AT1G68200 248 / 6e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G130600 [exp] 419 / 4e-147 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.004G169500 [exp] 377 / 1e-130 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.003G093600 [exp] 172 / 1e-50 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.001G140800 [exp] 167 / 1e-48 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.003G061600 [exp] 135 / 4e-37 AT3G19360 109 / 1e-27 Zinc finger (CCCH-type) family protein (.1) Potri.001G013200 [exp] 59 / 1e-09 AT5G06770 169 / 2e-51 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.016G046600 [exp] 57 / 3e-09 AT5G06770 265 / 2e-89 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.003G213200 [exp] 57 / 5e-09 AT5G06770 162 / 1e-48 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.006G191900 [exp] 56 / 1e-08 AT3G12130 256 / 2e-85 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.004G095100 [exp] 49 / 3e-06 AT1G66810 215 / 7e-68 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10043287 pacid=23168276 polypeptide=Lus10043287 locus=Lus10043287.g ID=Lus10043287.BGIv1.0 annot-version=v1.0 ATGAGTTACTCTGATTCCCAGCCTCACTTCACACAGCCGTGTTATCAATCAGGTAGTGATGCGATTGGTATATGGCCTCAATTCTCTATGAGCGGCATGA ATGAACAATTTGACCAACCTCCTTACAAAAGGGCCAAGAATTCTGATGATGACAACAGCGTCCATCTTACGAATTCTCGGTTGCCAAGCAATCCCCCTGT CAACCGAGGAACAACTTGCATCTTTTTCAAGACCAGAATGTGTGCAAAATTTAAGACAGGAACTTGTAGGAACGGCGAGAACTGCAATTTCGCTCATGGT ATGCAGGATTTGAGGCAGCCTCCGCCCAATTGGCAAGAACTTGCTGGAGTAGGTAGTGGCGGCGGCGGCGGTGGTGGGCGTGTTGATGAGGATAATAGGC CGTCTCCTGCGGTGAATTGGGAGGATGATCAGAGGATAATTCATAAGATGAAATTGTGTAAGAAGTTTTGCAATGGTGAGGAATGCCCGTATGGGGACAG ATGCAATTTTCTTCACGAGGATCCTGCTAAGTTTAGGAGCGATGCAGCCGGCAGGTTCAGGGAGAGTGCAGCAATAAGCATTGGAACCACGGGGATGCCA ATGGTGCATCATGGGAATGGTGGTGGATACAGTGCGGGTGAAGTTGTTGTTAGGCCTGCTCAAAGTGGTGGTTCAGATCCTCTTCGGGTTGCTAATAATG TGAAGCCGGTTTACTGGAAGACGAGATTGTGCTCGAAATTTGAGATTACAGGTCATTGCCCCTTTGGTGAGAAATGCCATTTTGCCCATGGGCTATCAGA GTTGCATGCAAATGGCGGACGCTTAGAGGGGGATTCCGCAAGTCAGGGAACTATTCTATCAAAGCCGTCTGTTTTTGGTAATGGTGGCAATCCATCCTCA TATATGACATCAGGTGTTGCTGAAGAATCAGAGGGCGGGAAGAAGTGCCTGGTGAAGTGGAATGGCCGAAAGAAGATTAACAGGATTTATGGCGACTGGC TTGACGATCTTCCATTAGCTCAAAACTTGACAAACGTGCAGAGCTGA
AA sequence Show only first row Show all	>Lus10043287 pacid=23168276 polypeptide=Lus10043287 locus=Lus10043287.g ID=Lus10043287.BGIv1.0 annot-version=v1.0 MSYSDSQPHFTQPCYQSGSDAIGIWPQFSMSGMNEQFDQPPYKRAKNSDDDNSVHLTNSRLPSNPPVNRGTTCIFFKTRMCAKFKTGTCRNGENCNFAHG MQDLRQPPPNWQELAGVGSGGGGGGGRVDEDNRPSPAVNWEDDQRIIHKMKLCKKFCNGEECPYGDRCNFLHEDPAKFRSDAAGRFRESAAISIGTTGMP MVHHGNGGGYSAGEVVVRPAQSGGSDPLRVANNVKPVYWKTRLCSKFEITGHCPFGEKCHFAHGLSELHANGGRLEGDSASQGTILSKPSVFGNGGNPSS YMTSGVAEESEGGKKCLVKWNGRKKINRIYGDWLDDLPLAQNLTNVQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10043287 [exp]	0	1
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10019431 [exp]	2.0	0.8755
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	3.0	0.8939
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10030493 [exp]	6.5	0.8769
AT3G07210			unknown protein		Lus10025908 [exp]	7.1	0.8824
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	9.4	0.8605
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	11.2	0.8433
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10036377 [exp]	13.1	0.8130
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10008528 [exp]	14.1	0.8663
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10019830 [exp]	14.3	0.8646
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10003807 [exp]	15.6	0.8524

Compare expression of checked genes

Lus10043287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.