Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT3G15680 110 / 1e-30 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT5G25490 107 / 1e-29 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT2G17975 66 / 4e-13 zinc finger (Ran-binding) family protein (.1) AT1G48570 66 / 2e-12 zinc finger (Ran-binding) family protein (.1) AT1G70650 47 / 2e-06 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G55040 45 / 2e-05 zinc finger (Ran-binding) family protein (.1) AT1G67325 43 / 4e-05 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019433 [exp] 266 / 4e-91 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10030054 [exp] 201 / 6e-67 AT2G26695 196 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10033023 [exp] 204 / 2e-65 AT2G26695 202 / 4e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10002896 [exp] 105 / 1e-28 AT3G15680 181 / 9e-59 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10002032 [exp] 104 / 2e-28 AT3G15680 182 / 3e-59 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10009049 [exp] 60 / 1e-10 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10009681 [exp] 60 / 2e-10 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10032790 [exp] 47 / 5e-06 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10011357 [exp] 45 / 2e-05 AT1G67325 366 / 1e-124 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149900 [exp] 190 / 2e-62 AT2G26695 177 / 2e-58 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G066900 [exp] 184 / 2e-59 AT2G26695 177 / 2e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.003G061300 [exp] 124 / 3e-36 AT3G15680 161 / 2e-51 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.001G172700 [exp] 116 / 3e-33 AT3G15680 170 / 7e-55 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G029900 [exp] 113 / 5e-32 AT3G15680 176 / 4e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.006G251300 [exp] 110 / 5e-31 AT3G15680 167 / 1e-53 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.012G046500 [exp] 66 / 8e-13 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.015G038200 [exp] 64 / 6e-12 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.005G115100 [exp] 57 / 1e-09 AT2G17975 328 / 4e-113 zinc finger (Ran-binding) family protein (.1) Potri.010G107400 [exp] 49 / 9e-07 AT1G70650 449 / 4e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043289 pacid=23167980 polypeptide=Lus10043289 locus=Lus10043289.g ID=Lus10043289.BGIv1.0 annot-version=v1.0 ATGAGCTGGACCGGAGGTGACTGGATGTGCCCAGCATGCCAACACCAGAACTTCAAGAAGAGGGAGAGCTGCCAGCGATGCGGCTACCCCAAATACGGAG GCCCTGACGTGGCAACCTACCTGTACAACAGGACAGAGGTGCTGGCAGGGGACTGGTATTGCGGCCCTTGTGGCTCCCACAACTATGCCAGCAGGGCCTC CTGCTTCAGGTGTGGTCAAGTTAAGATTGACTATGCTGCTGGTTATGCTTCTGACTCTGGCATGCCTCCGGGATGGAAGACTGGCGATTGGGTCTGCTCC AGGATGGGATGTGGCAGCCACAATTTTGCTAGCAGGGGTGAATGCTTCAAATGCAGGACATCAAGGGAATATGGCATTGCGTTTGAACAGTTGGGCCTGC TGGGCTTGGAGCCATCAGATCTAAACCTTTTCTGCACAGTGATAATGAAAAAAACAGTACCAATTGGTACAACTGGCAATGGCTGTGGATCTTGGATGCC AGTACTGAAGTTTAACCTCACCAAGATTTCTCCTAAATTACAACATCATGGTGAATCATGGATGCACAATTTCGGTGAAGGATTGGATTAA
AA sequence Show only first row Show all	>Lus10043289 pacid=23167980 polypeptide=Lus10043289 locus=Lus10043289.g ID=Lus10043289.BGIv1.0 annot-version=v1.0 MSWTGGDWMCPACQHQNFKKRESCQRCGYPKYGGPDVATYLYNRTEVLAGDWYCGPCGSHNYASRASCFRCGQVKIDYAAGYASDSGMPPGWKTGDWVCS RMGCGSHNFASRGECFKCRTSREYGIAFEQLGLLGLEPSDLNLFCTVIMKKTVPIGTTGNGCGSWMPVLKFNLTKISPKLQHHGESWMHNFGEGLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10043289 [exp]	0	1
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10019433 [exp]	1.0	0.9440
					Lus10007128 [exp]	3.2	0.8870
AT5G07980			dentin sialophosphoprotein-rel...		Lus10034692 [exp]	4.9	0.8841
AT2G38180			SGNH hydrolase-type esterase s...		Lus10027790 [exp]	7.5	0.7289
AT1G66570		ATSUC7	sucrose-proton symporter 7 (.1...		Lus10028615 [exp]	8.0	0.7245
					Lus10038619 [exp]	11.0	0.7979
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039721 [exp]	11.2	0.7958
					Lus10000169 [exp]	12.0	0.7966
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024649 [exp]	13.4	0.7892
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	13.7	0.8551

Compare expression of checked genes

Lus10043289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.