Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27040 151 / 2e-42 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT5G21150 142 / 2e-39 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G32940 130 / 5e-35 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G21030 117 / 2e-30 PAZ domain-containing protein / piwi domain-containing protein (.1) AT2G27880 59 / 3e-10 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT5G43810 54 / 1e-08 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT1G48410 51 / 1e-07 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015155 [exp] 273 / 1e-86 AT2G32940 1069 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10035331 [exp] 221 / 1e-67 AT2G32940 1080 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10025537 [exp] 147 / 4e-41 AT5G21030 1234 / 0.0 PAZ domain-containing protein / piwi domain-containing protein (.1) Lus10000295 [exp] 135 / 3e-38 AT2G27040 514 / 2e-175 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Lus10026750 [exp] 70 / 5e-14 AT5G21150 1253 / 0.0 ARGONAUTE 9, Argonaute family protein (.1) Lus10014386 [exp] 69 / 9e-14 AT2G27880 773 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Lus10031904 [exp] 59 / 2e-10 AT1G48410 1481 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031331 [exp] 59 / 2e-10 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10017983 [exp] 59 / 3e-10 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159400 [exp] 202 / 1e-60 AT2G32940 1169 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Potri.001G219700 [exp] 160 / 1e-45 AT2G27040 1403 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.006G025900 [exp] 159 / 3e-45 AT2G27040 1236 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.016G024200 [exp] 151 / 2e-42 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.008G010500 [exp] 140 / 1e-38 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.009G001500 [exp] 65 / 2e-12 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.001G213700 [exp] 60 / 1e-10 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.015G029000 [exp] 59 / 2e-10 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.012G037100 [exp] 59 / 4e-10 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.006G118600 [exp] 52 / 6e-08 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043291 pacid=23168150 polypeptide=Lus10043291 locus=Lus10043291.g ID=Lus10043291.BGIv1.0 annot-version=v1.0 ATGTCGAAAGTATCAACTGAATCCTCTCAGCTGCCTCCTCCAAAGCACTCGATTGTGAGTAGAAAGGGGTTTGGAACATTTGGGCGTCGGATCCCTTTGC TTACGAACCACTTCAGAGTTTCTGTTTCGATTAAGTATGAAGACGACAGACCTGTCGAAGGGAAGGGAATTGGGAGAAAGCTCATTGACAAGCTTTACCA GACCTATTCATCTGAGTTTGCTGGTAAAAGATTTGCGTACGACGGAGAAAAGGCCCTCTACACTGTAGGTCCTTTACCTCAGAAGAAGCTGGCGTTCACA GTTGTTCTTGAGGATGCTATCGCCAAAAGCGAACATGGAAGCCCCCAGTCAACAAGTAAGCGGTCCAAGCATTCTATAAGATCAAAGACTTTTAAAGTAG AGATCAATTATGCTGCCATGATCCCCATGAAGCCAATAGCTCTTGCCCTCAAAGGAGTTGATGCCGATAATGGTGGCATTCAGGATGCAGGGGTGCCTTT TGGTGAGACAGACAATTCTTTCACGATGATTCAAGGAACTACACTGATGTTGGAGAGGGTATAA
AA sequence Show only first row Show all	>Lus10043291 pacid=23168150 polypeptide=Lus10043291 locus=Lus10043291.g ID=Lus10043291.BGIv1.0 annot-version=v1.0 MSKVSTESSQLPPPKHSIVSRKGFGTFGRRIPLLTNHFRVSVSIKYEDDRPVEGKGIGRKLIDKLYQTYSSEFAGKRFAYDGEKALYTVGPLPQKKLAFT VVLEDAIAKSEHGSPQSTSKRSKHSIRSKTFKVEINYAAMIPMKPIALALKGVDADNGGIQDAGVPFGETDNSFTMIQGTTLMLERV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	0	1
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10027123 [exp]	1.0	0.9956
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	2.8	0.9946
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	3.9	0.9924
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	4.5	0.9901
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	4.9	0.9903
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	5.5	0.9890
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10028457 [exp]	6.0	0.9465
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	7.9	0.9823
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	8.0	0.9826
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10006548 [exp]	8.4	0.9466

Compare expression of checked genes

Lus10043291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.