Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25910 256 / 4e-83 Protein of unknown function (DUF1644) (.1) AT3G24740 187 / 1e-56 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G68140 173 / 1e-51 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT4G08460 158 / 3e-46 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT4G31410 143 / 4e-40 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G15430 140 / 8e-40 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G77770 140 / 2e-39 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G80220 136 / 3e-38 Protein of unknown function (DUF1644) (.1) AT2G26050 102 / 2e-25 Protein of unknown function (DUF1644) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019436 [exp] 537 / 0 AT3G25910 277 / 3e-91 Protein of unknown function (DUF1644) (.1) Lus10022809 [exp] 191 / 2e-58 AT3G24740 351 / 1e-120 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10011876 [exp] 188 / 3e-56 AT3G24740 358 / 5e-122 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10025356 [exp] 179 / 1e-54 AT1G68140 282 / 3e-95 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10004940 [exp] 176 / 2e-52 AT1G68140 319 / 4e-108 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10020957 [exp] 175 / 2e-52 AT1G68140 309 / 1e-104 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10009772 [exp] 168 / 4e-50 AT4G08460 256 / 3e-85 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10026800 [exp] 164 / 3e-48 AT3G25910 149 / 1e-42 Protein of unknown function (DUF1644) (.1) Lus10024758 [exp] 160 / 1e-46 AT4G08460 251 / 8e-83 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070500 [exp] 318 / 4e-108 AT3G25910 246 / 2e-79 Protein of unknown function (DUF1644) (.1) Potri.006G154300 [exp] 313 / 5e-106 AT3G25910 152 / 8e-43 Protein of unknown function (DUF1644) (.1) Potri.003G060800 [exp] 207 / 3e-63 AT3G25910 188 / 3e-55 Protein of unknown function (DUF1644) (.1) Potri.002G216600 [exp] 185 / 2e-55 AT3G24740 334 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.003G021800 [exp] 181 / 3e-54 AT1G68140 315 / 2e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.002G088700 [exp] 175 / 3e-52 AT4G08460 245 / 2e-80 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.001G208800 [exp] 171 / 1e-50 AT1G68140 312 / 6e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.005G172300 [exp] 171 / 1e-50 AT4G08460 219 / 2e-70 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.018G006400 [exp] 159 / 7e-46 AT4G31410 331 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.006G275400 [exp] 151 / 3e-43 AT4G31410 311 / 4e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF07800 [flax] [poplar] DUF1644 Protein of unknown function (DUF1644)
Representative CDS sequence Show only first row Show all	>Lus10043292 pacid=23168016 polypeptide=Lus10043292 locus=Lus10043292.g ID=Lus10043292.BGIv1.0 annot-version=v1.0 ATGCCGAAGCATAGAAGAGATCGTTCTAGGTCTTTAGATAGGTCATCTCCCTACGCAAGTAGTTCGAAAAGAACCAGACTCGGTTCGTCGAAAGCATCTC CCGAGACCGCTGAAAATGTAAAGGAATGGGACGATGCTCGGTGCCCTGTCTGTATGGAACATCCTCATAATGCTATTCTTCTTATATGCTCCTCTCATGA GAAAGGTTGCCGTCCATACATGTGTGATACGAGTTATCGTCACTCTAACTGTTTCGATCAGTTCCGTAAATCATTTGAGCAGGCATCGGAAACGACCACT GAGGTGCCAGACGAAAATAGTGATATAATCACTAGTGAGCTGGTCAGTAATACCGATGTGACTACTCCTTCAACATTAGAAGGGATAGTCTCTGCTGGAA ATACTTGTGATAACAAGGTGCCACCTCAGCTGCTGTGTCCCTTATGTAGAGGAGATATAACGACTTGGGTTGTCCTTGAGCCTGCTCGAGATTTCATGAA TGCGAAATCGAGGAGTTGTGCCTGTGAGATGTGCGATTTTAGTGGCACATATGCAGATCTTAGGAAGCATGCTAGGCACGAACACCCTCTTGTTCGACCG TCGGACGCTGATCCCGAAAGGGAACGGAACTGGAGGAGGCTGGAGCAAGAGAGGGATTTGGGGGACCTGCTCAGTACGCTTCAGTCTTCGTTCGGGGAAG AGAGGGTAGGAGATGAGAGTGGTTGGCTTACTGTGATTTTCTTTATAAGGATACTCCGACCAGGGTCAGGTGCAAGGAACAGCACCACACGGTCAGGTGC CACAAGAACTAGAACGCAATTGTTGAGTTTTCGGAGGCGTTCCACGAGATTGCTGGGGGAGACTCATGTTGAAGAAGAAACTGCATCTTCTTCCAGAGAC GAGGAGAACGATACGACATCGGATGGGGGTTCGTCAGTCCCTTTGAGGCGCAGTGAGCGCCTTAGGCAGCGGAGGAGAACGCCTGACTTATCATGA
AA sequence Show only first row Show all	>Lus10043292 pacid=23168016 polypeptide=Lus10043292 locus=Lus10043292.g ID=Lus10043292.BGIv1.0 annot-version=v1.0 MPKHRRDRSRSLDRSSPYASSSKRTRLGSSKASPETAENVKEWDDARCPVCMEHPHNAILLICSSHEKGCRPYMCDTSYRHSNCFDQFRKSFEQASETTT EVPDENSDIITSELVSNTDVTTPSTLEGIVSAGNTCDNKVPPQLLCPLCRGDITTWVVLEPARDFMNAKSRSCACEMCDFSGTYADLRKHARHEHPLVRP SDADPERERNWRRLEQERDLGDLLSTLQSSFGEERVGDESGWLTVIFFIRILRPGSGARNSTTRSGATRTRTQLLSFRRRSTRLLGETHVEEETASSSRD EENDTTSDGGSSVPLRRSERLRQRRRTPDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25910			Protein of unknown function (D...		Lus10043292 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10040365 [exp]	1.0	0.9456
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10001059 [exp]	2.0	0.9347
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	2.4	0.9300
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10015229 [exp]	4.0	0.9156
AT1G32310			unknown protein		Lus10030955 [exp]	4.0	0.9282
AT2G45320			unknown protein		Lus10000786 [exp]	6.6	0.9180
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Lus10028206 [exp]	8.0	0.8899
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10019983 [exp]	8.4	0.9245
AT1G75510			Transcription initiation facto...		Lus10010631 [exp]	9.2	0.9144
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009664 [exp]	11.2	0.9276

Compare expression of checked genes

Lus10043292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.