Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17486 242 / 4e-81 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 226 / 3e-74 PPPDE putative thiol peptidase family protein (.1) AT1G47740 207 / 1e-66 PPPDE putative thiol peptidase family protein (.1.2) AT5G25170 194 / 3e-62 PPPDE putative thiol peptidase family protein (.1) AT2G25190 189 / 6e-60 PPPDE putative thiol peptidase family protein (.1) AT4G31980 191 / 1e-56 unknown protein AT1G80690 174 / 2e-54 PPPDE putative thiol peptidase family protein (.1) AT4G25680 76 / 4e-16 PPPDE putative thiol peptidase family protein (.1) AT4G25660 73 / 3e-15 PPPDE putative thiol peptidase family protein (.1) AT3G07090 66 / 1e-12 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019437 [exp] 479 / 3e-174 AT4G17486 241 / 1e-80 PPPDE putative thiol peptidase family protein (.1.2) Lus10013657 [exp] 357 / 4e-126 AT4G17486 243 / 1e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10033030 [exp] 336 / 2e-117 AT4G17486 225 / 3e-74 PPPDE putative thiol peptidase family protein (.1.2) Lus10040170 [exp] 242 / 4e-81 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2) Lus10004755 [exp] 230 / 2e-76 AT4G17486 273 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) Lus10007844 [exp] 229 / 7e-76 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2) Lus10004372 [exp] 220 / 1e-68 AT5G47310 244 / 1e-77 PPPDE putative thiol peptidase family protein (.1) Lus10003951 [exp] 203 / 3e-65 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10032708 [exp] 203 / 3e-65 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070600 [exp] 327 / 2e-114 AT4G17486 235 / 1e-78 PPPDE putative thiol peptidase family protein (.1.2) Potri.006G154400 [exp] 322 / 8e-113 AT4G17486 220 / 8e-73 PPPDE putative thiol peptidase family protein (.1.2) Potri.001G154400 [exp] 252 / 7e-85 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.003G080300 [exp] 251 / 1e-84 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.002G134200 [exp] 208 / 3e-67 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 206 / 2e-66 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.018G021700 [exp] 204 / 5e-66 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.T126004 [exp] 204 / 8e-66 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 203 / 2e-65 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.006G261500 [exp] 203 / 2e-65 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10043293 pacid=23168340 polypeptide=Lus10043293 locus=Lus10043293.g ID=Lus10043293.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCTTCAGAAGCGATCTTGGATCATTCCAGCTCCGAGAAGGAGAACTCCGACGAAAGCGCCGAAACTCTGGTCTTTTTAAACGTCTACGACC TCACCTCTGTCAACAATTACACTTATTGGTTCGGCTTTGGGATTTTCCACTCCGGCATTGAAGTTCATGGTAAAGAGTATGGCTTTGGAGCTCATGATTT CCCAATTAGCGGAGTGTTTGAAGTTGAGCCAAGAAACTGCCCAGGTTTCATTTACAGATGCTCCATCCCACTGGGGCGCATATCGATGCATCATAGTGAG TTGAGGACATTCATAGAGAGCATGGCTTCCGAGTATCACGGTGACACGTACCACCTCATCTCCAAGAACTGCAACCATTTTACAGATGATGTCAGCTACA GGTTGGTTGGAAAGAGCATACCGGGTTTCATAAATCGACTTGCCCGGCTTGGTGCTCTATGTAGTTGTTTGCTTCCCGAAAGCCTTCAAGTTACTGCAGT GAAACAACTACCTGAACACCATGACTTTTTGGAAGAAGATGGAAGTGAGTCTATGACAACTGCCTCCCCGCCGCGTGGGTCTACAGAAATTGACGACAAG GATGAAGATAGGCATCTGCTGTCACCAAGAAATGGAGCTGCTGGAGAAATCTCATTTGTGAAAGAGAGATGTGGGACGGAAAACAAGCCACCTCCATTTC AAGAATTTGTGAGCAGAAGAAATGGGATAGAATAG
AA sequence Show only first row Show all	>Lus10043293 pacid=23168340 polypeptide=Lus10043293 locus=Lus10043293.g ID=Lus10043293.BGIv1.0 annot-version=v1.0 MAAASEAILDHSSSEKENSDESAETLVFLNVYDLTSVNNYTYWFGFGIFHSGIEVHGKEYGFGAHDFPISGVFEVEPRNCPGFIYRCSIPLGRISMHHSE LRTFIESMASEYHGDTYHLISKNCNHFTDDVSYRLVGKSIPGFINRLARLGALCSCLLPESLQVTAVKQLPEHHDFLEEDGSESMTTASPPRGSTEIDDK DEDRHLLSPRNGAAGEISFVKERCGTENKPPPFQEFVSRRNGIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17486			PPPDE putative thiol peptidase...		Lus10043293 [exp]	0	1
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10037686 [exp]	3.3	0.8156
AT4G17486			PPPDE putative thiol peptidase...		Lus10019437 [exp]	6.3	0.8252
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	6.5	0.8287
					Lus10027917 [exp]	7.3	0.8361
AT5G50175			unknown protein		Lus10019469 [exp]	7.3	0.8306
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10012502 [exp]	8.5	0.7749
AT4G35160			O-methyltransferase family pro...		Lus10001510 [exp]	10.2	0.8031
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Lus10024289 [exp]	10.9	0.7572
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	11.0	0.8343
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10030311 [exp]	13.0	0.7813

Compare expression of checked genes

Lus10043293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.