Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20060 375 / 5e-132 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52700 325 / 3e-112 alpha/beta-Hydrolases superfamily protein (.1) AT3G15650 315 / 3e-108 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G52695 154 / 1e-45 alpha/beta-Hydrolases superfamily protein (.1) AT1G47786 119 / 1e-32 alpha/beta-Hydrolases superfamily protein (.1) AT1G51300 119 / 2e-32 alpha/beta-Hydrolases superfamily protein (.1) AT1G52470 117 / 3e-31 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52460 115 / 9e-31 alpha/beta-Hydrolases superfamily protein (.1) AT1G47780 90 / 3e-22 alpha/beta-Hydrolases superfamily protein (.1) AT1G52440 85 / 2e-19 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019438 [exp] 488 / 1e-176 AT5G20060 387 / 1e-137 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10008078 [exp] 358 / 1e-125 AT5G20060 362 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10026054 [exp] 299 / 5e-102 AT1G52700 337 / 2e-117 alpha/beta-Hydrolases superfamily protein (.1) Lus10014347 [exp] 293 / 1e-99 AT1G52700 328 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1) Lus10002034 [exp] 182 / 7e-55 AT3G15650 239 / 1e-77 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070700 [exp] 397 / 7e-141 AT5G20060 398 / 8e-142 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.018G030200 [exp] 379 / 1e-133 AT5G20060 373 / 4e-132 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G251100 [exp] 373 / 2e-131 AT5G20060 370 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.001G173700 [exp] 350 / 2e-122 AT3G15650 389 / 7e-138 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G060300 [exp] 348 / 2e-121 AT1G52700 382 / 1e-135 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G023000 [exp] 92 / 1e-21 AT4G22300 357 / 1e-125 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1) Potri.004G001701 [exp] 41 / 0.0003 AT4G22300 199 / 9e-65 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02230 [flax] [poplar] Abhydrolase_2 Phospholipase/Carboxylesterase
Representative CDS sequence Show only first row Show all	>Lus10043294 pacid=23168311 polypeptide=Lus10043294 locus=Lus10043294.g ID=Lus10043294.BGIv1.0 annot-version=v1.0 ATGAATCAGGACCAGCAATTGGGCAAATTGGAGAGGTCTAGACTGGAGTTTGGACACAGACGCAGACCAGGTTCCGTTGTTTTTGGGATTATTGCCACGG CTTTGTTTCTGGCCAACATGAGCTTTACTGGTCCTTCAATGGCATCTGGTAAGAGAGCGTTTGATTTTGGCAAGACATTTGTTGTAAGACCTAAAGGCAA ACACCAAGCTACTGTTGTTTGGCTCCATGGCCTTGGTGATAATGGCTCTAGCTGGTCACAGCTCTTGGAGACCCTTCCTCTTCCAAATATCAAATGGATA TGTCCAACAGCTCCAACCCGGCCTATAACTATGTTTGGTGGTTTCCCATCTACAGCATGGTTTGACGTGAGAGATCTTTCAGAGGATGCTCCAGATGACG TAGAGGGTTTGGATGCTGCAGCAAACCATGTTGCAAACCTATTGGCATCGGAGCCTGCTGATATTAAAATAGCCATTGGAGGATTTAGTATGGGTGCAGC AACCTCCCTGTACTCTGGGACCTGCTTCACTATGGGAAAGTATGCCGATGGCAATCCATATCCAGCTAATTTGACTGCTGTTGTTGGATTAAGCGGCTGG CTTCCATGCTCAAAGACTTTGGGTAAACAACTAGCAGGAGTTGATGGGGCAGCTAACCGTGCTACATCTCTGCCAATTTTGCTATGCCATGGAAAAGGTG ATGATGTGGTCTCATACAAATACGGTGAGAAATCGTCTCAGGTTCTGAGCTCGCTTGGTTTCCAAGATGTAACGTTCAAATCATACAGTGGGCTTGGGCA TTACACAATCGCTCAAGAGATGGACGATCTTTGTGGCTGGCTAACTTCCAAGTTGGGGCTTGGTAGCAGCTCTTCATCAGCCAAGTAA
AA sequence Show only first row Show all	>Lus10043294 pacid=23168311 polypeptide=Lus10043294 locus=Lus10043294.g ID=Lus10043294.BGIv1.0 annot-version=v1.0 MNQDQQLGKLERSRLEFGHRRRPGSVVFGIIATALFLANMSFTGPSMASGKRAFDFGKTFVVRPKGKHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWI CPTAPTRPITMFGGFPSTAWFDVRDLSEDAPDDVEGLDAAANHVANLLASEPADIKIAIGGFSMGAATSLYSGTCFTMGKYADGNPYPANLTAVVGLSGW LPCSKTLGKQLAGVDGAANRATSLPILLCHGKGDDVVSYKYGEKSSQVLSSLGFQDVTFKSYSGLGHYTIAQEMDDLCGWLTSKLGLGSSSSSAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10043294 [exp]	0	1
					Lus10031452 [exp]	4.7	0.8519
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	5.1	0.8541
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10001559 [exp]	5.1	0.8138
AT1G73350			unknown protein		Lus10042294 [exp]	10.1	0.8516
AT3G14150			Aldolase-type TIM barrel famil...		Lus10013174 [exp]	10.4	0.8351
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Lus10003966 [exp]	10.5	0.8167
AT4G00290			Mechanosensitive ion channel p...		Lus10018822 [exp]	11.0	0.8146
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	14.0	0.8396
AT2G31955		CNX2	cofactor of nitrate reductase ...		Lus10008908 [exp]	15.1	0.8042
AT3G28760			unknown protein		Lus10005250 [exp]	15.7	0.8198

Compare expression of checked genes

Lus10043294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.