Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55190 406 / 4e-146 RAN3, ATRAN3 RAN GTPase 3 (.1) AT5G20010 400 / 1e-143 ATRAN1, RAN-1 ARABIDOPSIS THALIANA RAS-RELATED NUCLEAR PROTEIN, RAS-related nuclear protein-1 (.1) AT5G20020 390 / 1e-139 RAN2 RAS-related GTP-binding nuclear protein 2 (.1) AT5G55080 294 / 8e-102 ATRAN4 ras-related nuclear protein 4 (.1) AT4G39890 104 / 2e-27 AtRABH1c RAB GTPase homolog H1C (.1) AT4G18430 100 / 6e-26 AtRABA1e RAB GTPase homolog A1E (.1) AT4G19640 100 / 8e-26 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G39620 100 / 9e-26 AtRABG1 RAB GTPase homolog G1 (.1) AT5G45750 100 / 1e-25 AtRABA1c RAB GTPase homolog A1C (.1) AT5G45130 99 / 1e-25 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019420 [exp] 424 / 3e-151 AT5G55190 443 / 8e-159 RAN GTPase 3 (.1) Lus10019441 [exp] 414 / 4e-149 AT5G55190 434 / 2e-157 RAN GTPase 3 (.1) Lus10043276 [exp] 408 / 1e-144 AT5G55190 428 / 9e-153 RAN GTPase 3 (.1) Lus10004687 [exp] 100 / 5e-26 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10040255 [exp] 100 / 5e-26 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10034903 [exp] 100 / 8e-26 AT5G45130 258 / 2e-88 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10001026 [exp] 100 / 1e-25 AT1G07410 366 / 2e-130 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10015297 [exp] 99 / 2e-25 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10017679 [exp] 99 / 4e-25 AT5G60860 426 / 4e-154 RAB GTPase homolog A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250300 [exp] 406 / 3e-146 AT5G55190 424 / 4e-153 RAN GTPase 3 (.1) Potri.018G030900 [exp] 402 / 2e-144 AT5G55190 424 / 3e-153 RAN GTPase 3 (.1) Potri.018G030700 [exp] 402 / 2e-144 AT5G55190 424 / 3e-153 RAN GTPase 3 (.1) Potri.006G250400 [exp] 391 / 3e-140 AT5G55190 411 / 3e-148 RAN GTPase 3 (.1) Potri.005G073000 [exp] 101 / 3e-26 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.019G092500 [exp] 100 / 4e-26 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.010G197200 [exp] 100 / 6e-26 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.013G123600 [exp] 100 / 6e-26 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.018G079300 [exp] 100 / 6e-26 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.015G113000 [exp] 100 / 7e-26 AT5G45130 339 / 2e-120 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10043297 pacid=23168095 polypeptide=Lus10043297 locus=Lus10043297.g ID=Lus10043297.BGIv1.0 annot-version=v1.0 ATGGCTCTCCCGAATCAGCAAGTAGTTGACTACCCGAGCTTCAAGCTCGTTATTGTTGGCGATGGAGGCACCGGGAAAACCACATTCGTCAAGAGACATT TGACTGGAGAGTTTGAGAAGAAATATGAACCGACCATTGGCGTGGAAGTCCATCCATTGGATTTCACTACCAACTGTGGAAAGATCCGATTCTATTGCTG GGACACAGCTGGACAAGAGAAATTTGGCGGACTCAGAGATGGATACTACATCCATGGTCAATGTGCGATTATAATGTTTGATGTTACGGCAAGATTGACC TACAAGAATGTTCCTACATGGCACCGTGATCTGTGCAGGGTTTGTGAAAATATACCCATTGTCCTCTGTGGAAACAAGGTTGATGTGAAAAACAGGCAGG TTAAGGCTAAGCAGGTTACTTTCCACAGGAAGAAGAATCTCCAGTACTATGAGATATCTGCCAAGAGCAACTACAACTTTGAGAAGCCTTTCCTCTACCT TGCTCGCAAGCTTGCTGGGGACCCAAACAATGGGCCCCCAACCCTTCTCTTTGTGGAGGCAGTTGCCCTGCGTCCTCCAGAGGTTCAAATCGACTTGGCT ACACAGGAACAACATGAACAAGAGCTTGCTCAAGCTGCTAACCAGCCTCTTCCTGATGACGATGATGATGCATTTGAGTAA
AA sequence Show only first row Show all	>Lus10043297 pacid=23168095 polypeptide=Lus10043297 locus=Lus10043297.g ID=Lus10043297.BGIv1.0 annot-version=v1.0 MALPNQQVVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNNGPPTLLFVEAVALRPPEVQIDLA TQEQHEQELAQAANQPLPDDDDDAFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	0	1
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	1.0	0.9332
AT1G70280			NHL domain-containing protein ...		Lus10012989 [exp]	2.8	0.8520
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	3.2	0.8717
AT2G19580		TET2	tetraspanin2 (.1)		Lus10040551 [exp]	3.9	0.8575
AT2G30920		ATCOQ3, EMB3002	embryo defective 3002, coenzym...		Lus10020863 [exp]	4.0	0.8145
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	5.0	0.8452
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10015718 [exp]	5.7	0.8271
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10032787 [exp]	6.0	0.8255
AT4G39840			unknown protein		Lus10024058 [exp]	7.1	0.8305
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10038599 [exp]	7.9	0.8012

Compare expression of checked genes

Lus10043297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.