Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26650 1188 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 1011 / 0 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 996 / 0 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT4G22200 559 / 0 AKT3, AKT2/3 potassium transport 2/3 (.1) AT5G46240 557 / 0 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 542 / 0 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32650 429 / 2e-140 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT5G37500 376 / 4e-117 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT3G02850 367 / 8e-114 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT2G03430 68 / 2e-12 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019442 [exp] 1683 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 1443 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 986 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10013115 [exp] 968 / 0 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10008082 [exp] 950 / 0 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10017766 [exp] 786 / 0 AT2G26650 719 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10042831 [exp] 583 / 0 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10019944 [exp] 578 / 0 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10028128 [exp] 575 / 0 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071400 [exp] 1277 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G249900 [exp] 1077 / 0 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G031600 [exp] 1065 / 0 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.006G154600 [exp] 896 / 0 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.004G132200 [exp] 582 / 0 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.003G018800 [exp] 580 / 0 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.018G035500 [exp] 474 / 7e-157 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.006G245000 [exp] 472 / 3e-156 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 458 / 4e-151 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G043000 [exp] 362 / 5e-112 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0030 [flax] [poplar] PF11834 [flax] [poplar] KHA KHA, dimerisation domain of potassium ion channel CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10043298 pacid=23167986 polypeptide=Lus10043298 locus=Lus10043298.g ID=Lus10043298.BGIv1.0 annot-version=v1.0 ATGGAGAATCTGCTAGGTATAAGGATGTTCAACGTCTCTGTTTGTGGGCAAGATGAGCTGGAGCACATATCGAGGGACGGAAGCCAGTACAGTCTCTCAA CTGGGATACTGCCATCTCTTGGTGCAAGAAGTAATCGGAGGGTCAGGCTGCGCAAGTTCATTATCTCTCCTTACGATCGCCATTACAGGATATGGGAGAC ATTCCTCATTGTCTTGGTCATTTACACGGCTTGGGCATCTCCTTTTGAATTCGGCTTTCTTAAAAAGCCAGAGAAGCCACTCTCGATTGTCGATAACATT GTCAATGCATTCTTTGCCGTGGATATCATTCTTACATTCTTTGTGGCTTACCTTGACAAATCTACCTACCTTCTTGTGGACAATTGGAAAAAGATTGCTT GGAAGTATACAAGAACTTGGCTGGTCTTTGATGTCATTTCCATCATCCCGTCCGAGCTCGCTTGGAAAATCTCTCCCAAGCCATTCCGGTCATATGGCTT GTTTAACATGCTTCGTCTGTGGCGTCTTAGAAGAGTTAGTTCTCTCTTTTCCAGGTTGGAAAAAGACAGAAACTACAACTACTTCTGGGTCCGATGTGCC AAACTCATCTGTGTCACCCTTTTCGCTGTCCATTGTGCTGGATGCTTCTATTATCTTATTGCTGCTCGCTATCACAATCCTGAAAGAACCTGGATTGGAG CTTCGCTTGGGAATGATTTTCACGAAAGAGGAGTATGGATTCGATATGTGACGTCAATGTACTGGTCTATTACTACTCTGACAACAGTTGGCTATGGCGA TTTGCATCCTGTGAACACAAGAGAAATGTTATTTGACATCTTTTATATGCTCTTTAACCTTGGATTGACTGCATACTTGATTGGTAACATGACCAACTTG GTTGTTCATGGTACCAGTCGAACGAGAAGATTTAGAGATACCATTCAAGCTGCTTCCAGCTTTTCTCATAGGAACCAGTTGCCAGTCAGGTTGCAAGATC AGATGCTTGCACATTTGTGTTTGAGATTCAGGACAGACTCAGAGGGACTGCAGCAGCAGGAGACTCTTGATTCCCTCCCGAAAGCCATTCGCTCGAGCAT TTCCCATTACCTGTTCTACTCTCTCGTCGACAAAGTTTACTTGTTTCGTGGGGTGTCTAACGACTTGCTTTTCCAGTTGGTCTCGGAGATGAAAGCTGAG TATTTCCCTCCCAAAGAAGATGTGATTTTGCAGAATGAAGCCCCAACAGACTTCTATATCCTCGTCACTGGTTCCGTCGTGGTTGGGGAGCTAAAAACGG GTGATGTTTGTGGTGAGATTGGAGTGCTTTGCTACAAACCACAACTGTTTACTGTGAGGACCAAAAGACTGTGCCAGCTACTTCGAATGAACCGAACTAC ATTCTTGAATATTGTTCAAGCCAATGTTGGAGACGGGACAATTATTATGAACAATCTTCTTCAGCATTTGAAAGATCTCAAGGATCCAATCATGGAGGGA GTTCTGCTGGAAACAGAGAACATGCTGGCTCATGGAAGAATGGACATTCCTCTCAGTCTATGCTTTGCTGCAATGAGAGGAGATGATCTCTTGTTGCATC AGCTACTAAAACGCGGTCTAGATCCAAATGAGTCCGACAATAATGGCAAAGCAGCTCTGCACATTGCAGCATCTGGAGGAAGTGAGAACTGTGTACTTCT TCTGCTGGACTATGGGGCTGATCCTAACTGTAGAGACTCAGATGGCAATGTTCCATTATGGGAGGCAATGAAAGCTGGCCATACAGGAGTGGTGAAGTTG TTGTTAGAAAATGGCGCCTCCATACTATCCGGAGATGTCGGTCATTTCGCCTGCACTGCTGCCGAGGAGAATAACCTCGACTTGCTCAAGGAAATCGCAC GCCATGGGGGAGACATCAAGTGCCCCAAGAGCAACGGTAGCACAGCACTGCACGTTGCTGTCTGCGAGGATAACCCCGAGATCATCAGGTACCTTCTCGA CCAAGGTGCTGATATGGACAAACCAGATGCCAATGGTTGGACTGCAAGAGAGTTGGCTGATCAACAAGGACATGAGGAGATACAGTTCATGTTTAAGAAA TGTAAAGAGCCACCGAAACCTCAATCCATTGTGTCGGTTCCCGAGAAGCAAGAGAACCGAGTTAGGTACCTGGGAAGGTTCTCAAGCGAGCCAACCATCC ACCCGCTGCCTTCCGAAGCTGTCTTGTCTGAGGGGTCGTTGGGGCGCCAAAGTCGGCCAAGGCGTAAGACTAACAATTTCCACAACTCTCTTTTCGGAAT GATGTCGGCTGCACAAAATGGGGATACTAATAACAATGCAGGAGTTATGTTTTCTGTCAATAACAATAATACAAGCCAGGGGAATAGTACAGAAGCAGCT AGAGTGATGATAAGTTGCCCTGAACAGGGAGATGATACCAAGAAGCTTGTGCTGCTTCCTAAGAGCTTCCAGGAGTTACTTGACTTGGGGGCAAAGAAAT ATGGGATAAAAGTAGGTAAAGTAGTGATGCAAAACAGAGTTGAAGTTGATGATATTGAAGTGGTTAGAGATGGTGATGAACTAATATTTGTTAGTGATGG AACACCTGAGACTACTAATACTGCTACTACAAATACAGATAAGCTGATTCAGTAA
AA sequence Show only first row Show all	>Lus10043298 pacid=23167986 polypeptide=Lus10043298 locus=Lus10043298.g ID=Lus10043298.BGIv1.0 annot-version=v1.0 MENLLGIRMFNVSVCGQDELEHISRDGSQYSLSTGILPSLGARSNRRVRLRKFIISPYDRHYRIWETFLIVLVIYTAWASPFEFGFLKKPEKPLSIVDNI VNAFFAVDIILTFFVAYLDKSTYLLVDNWKKIAWKYTRTWLVFDVISIIPSELAWKISPKPFRSYGLFNMLRLWRLRRVSSLFSRLEKDRNYNYFWVRCA KLICVTLFAVHCAGCFYYLIAARYHNPERTWIGASLGNDFHERGVWIRYVTSMYWSITTLTTVGYGDLHPVNTREMLFDIFYMLFNLGLTAYLIGNMTNL VVHGTSRTRRFRDTIQAASSFSHRNQLPVRLQDQMLAHLCLRFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAE YFPPKEDVILQNEAPTDFYILVTGSVVVGELKTGDVCGEIGVLCYKPQLFTVRTKRLCQLLRMNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEG VLLETENMLAHGRMDIPLSLCFAAMRGDDLLLHQLLKRGLDPNESDNNGKAALHIAASGGSENCVLLLLDYGADPNCRDSDGNVPLWEAMKAGHTGVVKL LLENGASILSGDVGHFACTAAEENNLDLLKEIARHGGDIKCPKSNGSTALHVAVCEDNPEIIRYLLDQGADMDKPDANGWTARELADQQGHEEIQFMFKK CKEPPKPQSIVSVPEKQENRVRYLGRFSSEPTIHPLPSEAVLSEGSLGRQSRPRRKTNNFHNSLFGMMSAAQNGDTNNNAGVMFSVNNNNTSQGNSTEAA RVMISCPEQGDDTKKLVLLPKSFQELLDLGAKKYGIKVGKVVMQNRVEVDDIEVVRDGDELIFVSDGTPETTNTATTNTDKLIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10043298 [exp]	0	1
AT5G59070			UDP-Glycosyltransferase superf...		Lus10016475 [exp]	5.9	0.8902
AT5G15640			Mitochondrial substrate carrie...		Lus10035134 [exp]	9.6	0.8838
AT1G72230			Cupredoxin superfamily protein...		Lus10027043 [exp]	14.1	0.8900
AT2G37670			Transducin/WD40 repeat-like su...		Lus10024399 [exp]	17.3	0.8141
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10001282 [exp]	17.5	0.8879
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011883 [exp]	22.5	0.8581
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10032857 [exp]	24.5	0.8730
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10016249 [exp]	25.3	0.8814
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	29.7	0.8791
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10008097 [exp]	32.6	0.8760

Compare expression of checked genes

Lus10043298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.