Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26640 877 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G04220 742 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT5G43760 728 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G19440 681 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 671 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G01120 637 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT4G34510 612 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G68530 612 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G25450 590 / 0 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT2G26250 586 / 0 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019446 [exp] 1038 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10006637 [exp] 768 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10041177 [exp] 744 / 0 AT1G04220 782 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10042318 [exp] 691 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 690 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10001657 [exp] 677 / 0 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002533 [exp] 673 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10021895 [exp] 661 / 0 AT1G04220 694 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10002691 [exp] 658 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G249200 [exp] 888 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.018G032200 [exp] 884 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 793 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 781 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 781 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079700 [exp] 748 / 0 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 746 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 744 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080400 [exp] 740 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.009G116700 [exp] 683 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10043300 pacid=23168221 polypeptide=Lus10043300 locus=Lus10043300.g ID=Lus10043300.BGIv1.0 annot-version=v1.0 ATGATGCCACAGCCAAAACCTAATACGCCCTTGATTCAACCCTCACTACCTTCACCATCAAGGAACCTCCCAGATTTCAAGAATTCCGTGAAGCTGAAAT ACGTGAAGCTGGGATATCATTACCTCATTACTCATGGCATGTTCCTCTTCCTTTCCCCTCTTGTAGTTGTGCTTGCAGCTCAGCTTTCGACATTCTCCAT CAACGATCTCCGAGACTTGTGGGAACATCTCCAATACAATCTTATCTCCGTAGTCCTGTGCTCGACCTTGATGGTTTTCCTTTCCACGCTCTACTTTGTG ACTCGTCCCAGGCCTGTTTATCTCGTCAACTTCTCATGTTACAAGGCCGAGGATTCGACAAAATGCACCAAGAAGATCTTCATGGACCGGTCTTGCATGG CCGGGACGTTCACCGAGGAGAGTCTCGAATTCCAGAGGAAGATCCTCGAACGGTCTGGTTTAGGCGATTCAACGTATTTACCGGAGGCCGTGCTGGCTAC CCCTCCAAACCCTTCTATGCAAGAGGCCAGGAGAGAAGCCGAGGCTGTGATGTTCGGAGCTATCGATGAGCTCATGGCAAAGTCGTGTGTTAACCCCAAG GATATCGGCATCTTGGTTGTGAATTGCAGTTTGTTCAATCCCACGCCGTCGTTATCTGCAATGGTTGTCAACCATTACAAGCTTCGAGGAAATATTGTTA GCTACAATCTCGGTGGGATGGGATGCAGCGCTGGTTTAATCTCTATAGCTCTGGCGAAAGAGCTTCTTCAGGTGCATCCCAATTCGTATGCATTGGTTAT AAGCACTGAGAACATCACTTTGAATTGGTATTTTGGGAATGACCGGTCGAAGCTCGTTTCAAACTGCCTTTTCCGTATGGGGTGTGCTGCGATTCTGCTC TCCAACCGAAGATCGGACAGGAGAAGGTCTAAGTACGAGCTGGTTCACACCGTTCGAACTCACAAAGGTGCCGACGACAAGTGCTTCTCTTGCGTCACCC AAGAAGAGGATCGAAACGGGAAAGTCGGTGTGACTTTGTCGAAGGATCTGATGGCAGTTGCTGGGGATGCTTTGAAGACTAACATCACTACCTTGGGGCC TCTCGTCCTCCCGATGTCGGAACAGCTTATTTTCCTTGCAACATTGGTCGGAAAGAAGGTTTTGAAGATGAAGATCAAGCCGTACATCCCTGATTTCAAG CTGGCCTTTGAGCACTTCTGCATCCATGCCGGTGGGAGAGCTGTATTGGATGAGTTGGAGAAGAACTTGCAGCTTTCTGAGTGGCACATGGAGCCGTCTA GAATGACGCTCTACCGATATGGGAACACTTCGAGCAGTTCTCTGTGGTATGAACTAGCTTATGCGGAAGCGAAAGGGAGGATTAGGAAGGGGGATAGAAC ATGGCAAATAGCGTTTGGTTCAGGATTCAAGTGTAACAGTGCTGTGTGGAAGGCTTTGAAGACTATTGATCCTGCAAAAGAGAATAACCCTTGGATGGAT GAAATTCATGAGTTCCCCGTCGCTGTGCCCAAGGTATCAACAATCGCTTAG
AA sequence Show only first row Show all	>Lus10043300 pacid=23168221 polypeptide=Lus10043300 locus=Lus10043300.g ID=Lus10043300.BGIv1.0 annot-version=v1.0 MMPQPKPNTPLIQPSLPSPSRNLPDFKNSVKLKYVKLGYHYLITHGMFLFLSPLVVVLAAQLSTFSINDLRDLWEHLQYNLISVVLCSTLMVFLSTLYFV TRPRPVYLVNFSCYKAEDSTKCTKKIFMDRSCMAGTFTEESLEFQRKILERSGLGDSTYLPEAVLATPPNPSMQEARREAEAVMFGAIDELMAKSCVNPK DIGILVVNCSLFNPTPSLSAMVVNHYKLRGNIVSYNLGGMGCSAGLISIALAKELLQVHPNSYALVISTENITLNWYFGNDRSKLVSNCLFRMGCAAILL SNRRSDRRRSKYELVHTVRTHKGADDKCFSCVTQEEDRNGKVGVTLSKDLMAVAGDALKTNITTLGPLVLPMSEQLIFLATLVGKKVLKMKIKPYIPDFK LAFEHFCIHAGGRAVLDELEKNLQLSEWHMEPSRMTLYRYGNTSSSSLWYELAYAEAKGRIRKGDRTWQIAFGSGFKCNSAVWKALKTIDPAKENNPWMD EIHEFPVAVPKVSTIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10043300 [exp]	0	1
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019446 [exp]	3.6	0.8232
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10000804 [exp]	7.7	0.7776
AT4G34660			SH3 domain-containing protein ...		Lus10028785 [exp]	10.5	0.6843
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10025971 [exp]	11.3	0.7958
AT2G19130			S-locus lectin protein kinase ...		Lus10012955 [exp]	13.0	0.7915
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025133 [exp]	15.8	0.7867
AT2G18630			Protein of unknown function (D...		Lus10040334 [exp]	15.9	0.7645
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	18.5	0.7304
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10039935 [exp]	21.1	0.7696
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10001044 [exp]	22.0	0.7613

Compare expression of checked genes

Lus10043300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.