Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15610 491 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52730 489 / 2e-175 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G15470 480 / 4e-172 Transducin/WD40 repeat-like superfamily protein (.1) AT2G46290 119 / 9e-31 Transducin/WD40 repeat-like superfamily protein (.1) AT2G46280 105 / 6e-26 TIF3I1, TRIP-1 TGF-beta receptor interacting protein 1 (.1.2.3) AT3G49660 82 / 2e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 79 / 2e-16 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G71840 69 / 7e-13 transducin family protein / WD-40 repeat family protein (.1) AT5G08560 67 / 6e-12 transducin family protein / WD-40 repeat family protein (.1.2) AT5G25150 66 / 1e-11 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019450 [exp] 615 / 0 AT3G15610 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021857 [exp] 119 / 6e-31 AT2G46290 549 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10010332 [exp] 118 / 2e-30 AT2G46290 550 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 77 / 4e-15 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 74 / 2e-14 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 71 / 1e-13 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001046 [exp] 71 / 2e-13 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10006916 [exp] 70 / 2e-13 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 69 / 6e-13 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G059500 [exp] 535 / 0 AT1G52730 573 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G174600 [exp] 531 / 0 AT1G52730 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G141400 [exp] 115 / 8e-30 AT2G46290 553 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G100101 [exp] 110 / 7e-28 AT2G46290 553 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 74 / 1e-14 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 72 / 1e-13 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 71 / 2e-13 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 69 / 7e-13 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G171600 [exp] 67 / 2e-12 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.008G002700 [exp] 67 / 3e-12 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10043302 pacid=23168339 polypeptide=Lus10043302 locus=Lus10043302.g ID=Lus10043302.BGIv1.0 annot-version=v1.0 ATGGAGGCGGTAGCAGCAGCAGATTCCAGTCCCATGCTAAGAAATGGAGAAACTGGAGATTGGATTGGAACGTTTGAAGGGCATAAAGGTGCTGTGTGGA GCTCCTGCTTGGATACTAACGCTTTACGTGCTGCATCTGCTTCTGCTGATTTTACTGCGAAAGTTTGGGATGCATTAACGGGAGATGTGCTGCATTCATT CGAACACAAGCACATAGTGAGAGCTTGTACATTTTCAGAGGACACACACCTTTTATTAACTGGTGGAATGGAGAAAATCTTGCGCATTTATGATCTCAAC CGCCCAGATGCACCTCCAAGAGAAGTTGATAAGTCACCTGGTTCTGTCAGAGCTCTTGCCTGGCTGCATAGTGATCAGACCATTTTGAGTTCATGCACTG ACATGGGGGGTGTAAGGTTGTGGGATGTAAGAAGTGGTCAGATTGTGCAGACCCTTGAGACCAAGTCATCTGTGACTAGTGCTGAAGTCAGTCAGGATGG TCGCTATATAACAACTGCCGATGGCTCGACTGTAAAGTTTTGGGATGCAAATCATTTTGGGCTCGTGAAGAGCTACGATATGCCATGCACTGTGGAATCA GCTTCCTTGGAACCCAAGTATGGAAATAAGTTCATTGCTGCGGGAGAAGACATGTGGGTTCACGTATTTGATTTTCACACTGGGGAGGAGATAGCTTGCA ACAAGGGTCACCATGGTCCAGTTCACTGCTTGCGCTTTTCACCTGGAGGAGAATCATATGCGTCTGGATCGGAGGATGGAACCATCAGAATATGGCAGAC TGGTCCACTAACGAGCGAGGAGAAAGAAGGGCTGGCAACAGCGAATGGAACGGCGGGGAAGGCGAAGGTGAGCGCTACAGAAGAAGTGTCGAGAAAGATT GAAGGATTTCAGATTAGTGACGAGGGGAAGGCTAAAGAGAAGGACGAGGCAGCAGGGAAAGAGTGA
AA sequence Show only first row Show all	>Lus10043302 pacid=23168339 polypeptide=Lus10043302 locus=Lus10043302.g ID=Lus10043302.BGIv1.0 annot-version=v1.0 MEAVAAADSSPMLRNGETGDWIGTFEGHKGAVWSSCLDTNALRAASASADFTAKVWDALTGDVLHSFEHKHIVRACTFSEDTHLLLTGGMEKILRIYDLN RPDAPPREVDKSPGSVRALAWLHSDQTILSSCTDMGGVRLWDVRSGQIVQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYDMPCTVES ASLEPKYGNKFIAAGEDMWVHVFDFHTGEEIACNKGHHGPVHCLRFSPGGESYASGSEDGTIRIWQTGPLTSEEKEGLATANGTAGKAKVSATEEVSRKI EGFQISDEGKAKEKDEAAGKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15610			Transducin/WD40 repeat-like su...		Lus10043302 [exp]	0	1
AT3G15610			Transducin/WD40 repeat-like su...		Lus10019450 [exp]	1.0	0.9196
AT1G68620			alpha/beta-Hydrolases superfam...		Lus10041473 [exp]	3.2	0.9100
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031819 [exp]	11.5	0.8756
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Lus10010752 [exp]	11.7	0.8712
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	12.7	0.8957
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10012073 [exp]	13.1	0.8911
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	13.8	0.8769
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Lus10038865 [exp]	14.3	0.8406
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027779 [exp]	15.6	0.8777
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	16.3	0.8891

Compare expression of checked genes

Lus10043302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.