Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19970 192 / 1e-58 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019451 [exp] 434 / 1e-152 AT5G19970 298 / 3e-98 unknown protein Lus10003029 [exp] 42 / 0.0004 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071900 [exp] 244 / 1e-78 AT5G19970 283 / 6e-93 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043303 pacid=23167902 polypeptide=Lus10043303 locus=Lus10043303.g ID=Lus10043303.BGIv1.0 annot-version=v1.0 ATGATTGTCCCTCACTATAAAATCCTATCCAAACGCCTCAAAGGCCCAATACGGAAAGAGAAACATTTCCGAGTGATGATCATGGAAAAAACCGATCATC ATCACAGCCGTCGATCACTATCCTCTCCTTCTCCATTCTCCGCCGTCGGATTCGACCTCCTACCCCCCGAACTCATCGAAACCATACTCCTCTCCTTAGC CTTACCCGAACTCTTCCGCCTCAAATCCCTCAACAAATCCGTTTCCCGAATCATCTCCGACCGCAACTTCGTCCGCGAATTCAACTCCCGCTCCACCGCC GCCACCTGGCTTTTTGTTTACAAGAAGCGATGGCACAAGGATGCCATCCTCCAACGCTTCACACGAAGCTCCGACCGGGTCTGGTTCAAAATCGAGATCG GAGACCTCCTCCGTCCCGTCATCTGTCCCGGCGAGAGCCTCTATTTCTTGACGGCCAGCGGGAACGTCTTCCTATTCGCTTCCAATAGCCGGAAGGAAAT CATCGCCGTCAATTTGGTCGCCAAGACGGCGGCGAAACTCCCGCCCAGCCCGCTGGGTCCACGTGGCACGTCGTCGTGGCGGAGATCCGGTATGAAGCTG GTTTCCGGGTCATCAGACGCTCACTTCCGGTTCATGTTCGGGGAATTGGTCGACTCTCGCCCTGTACTTTTTATCTACTCCTCGGATTCCGACACGTGGC AGTCACTCGAAGCGCTGGACGGTGGGGGTTACGACCGATCAGTCAATGATGATGATGAAATTCAACACATCTTCCTCAATATATCCAACGGTCCCGAAGG GAACATGGTGATAGCCGTCCGATTAGGGAGGTACGGCTGGGACCAACCGGTGGTCCTACGGCCGAGATACGACTCGAACCACCAGGGCGTCGTTTAA
AA sequence Show only first row Show all	>Lus10043303 pacid=23167902 polypeptide=Lus10043303 locus=Lus10043303.g ID=Lus10043303.BGIv1.0 annot-version=v1.0 MIVPHYKILSKRLKGPIRKEKHFRVMIMEKTDHHHSRRSLSSPSPFSAVGFDLLPPELIETILLSLALPELFRLKSLNKSVSRIISDRNFVREFNSRSTA ATWLFVYKKRWHKDAILQRFTRSSDRVWFKIEIGDLLRPVICPGESLYFLTASGNVFLFASNSRKEIIAVNLVAKTAAKLPPSPLGPRGTSSWRRSGMKL VSGSSDAHFRFMFGELVDSRPVLFIYSSDSDTWQSLEALDGGGYDRSVNDDDEIQHIFLNISNGPEGNMVIAVRLGRYGWDQPVVLRPRYDSNHQGVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19970			unknown protein		Lus10043303 [exp]	0	1
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019911 [exp]	118.2	0.6948
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10025975 [exp]	204.0	0.6856

Compare expression of checked genes

Lus10043303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.