Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26910 370 / 1e-119 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT1G15520 271 / 1e-83 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT3G16340 242 / 1e-73 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G66950 235 / 3e-71 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT1G15210 229 / 3e-69 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT2G36380 229 / 5e-69 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G59870 223 / 8e-67 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT2G29940 216 / 1e-64 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G30842 173 / 2e-49 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT3G53480 168 / 9e-48 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019453 [exp] 444 / 2e-147 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Lus10041684 [exp] 283 / 3e-93 AT1G15520 899 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 287 / 2e-89 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 287 / 2e-89 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 282 / 8e-88 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 274 / 7e-85 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 262 / 1e-80 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 259 / 2e-79 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10037562 [exp] 246 / 5e-75 AT1G59870 2178 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G074500 [exp] 399 / 3e-130 AT2G26910 2293 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Potri.018G032900 [exp] 294 / 7e-92 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 285 / 1e-88 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 285 / 1e-88 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G057351 [exp] 261 / 1e-88 AT1G15520 345 / 3e-110 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 284 / 2e-88 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 283 / 4e-88 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 281 / 2e-87 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 280 / 5e-87 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 279 / 5e-87 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Lus10043305 pacid=23168355 polypeptide=Lus10043305 locus=Lus10043305.g ID=Lus10043305.BGIv1.0 annot-version=v1.0 ATGTATGCAGCAGTTCTCTTCATTGGAATCACCAATGCTACAGCAGTTCAACCTGTGGTCTCCATCGAGAGGTTCGTCTCGTATCGAGAACGAGCTGCCG GGATGTACTCAGCTCTGCCTTTTGCATTTGCTCAGGTTGTGATTGAGTTTCCATACGTTTTTGGACAGACGATCATATACTGCTCGATATTCTACTCCAT GGCAGCATTTGAGTGGAGTGCTCTCAAGTTCATCTGGTACACATTCTTCATGTACTTCAGCATGCTCTACTTCACCTTCTACGGCATGATGACGACAGCC CTGACTCCAAACCATAACGTTGCCGCCGTCATCTCCGCACCCTTTTACATGCTCTGGCATCTCTTCAGCGGTTTCATGATCCCCCACAAGAGAATCCCAA TTTGGTGGAGATGGTACTACTGGGCAAACCCGATAGCTTGGACGTTATACGGACTGTTGACATCCCAGTACGGAGACGACGGGAGGGCCATGATGCTGCC GGACGGAAATCAGATGGCGCCGGTGAAGCTGGTGCTCCGGGAATTGCTTGGTTACAAACATGAGTTCCTGGGAGTTGCAGGTGTAATGGTGGTTGGTTTC TGTTTGCTGTTCGCCGTCATTTTCGCTTTCGCAATAAAATCCTTCAATTTCCAGAGGAGATAA
AA sequence Show only first row Show all	>Lus10043305 pacid=23168355 polypeptide=Lus10043305 locus=Lus10043305.g ID=Lus10043305.BGIv1.0 annot-version=v1.0 MYAAVLFIGITNATAVQPVVSIERFVSYRERAAGMYSALPFAFAQVVIEFPYVFGQTIIYCSIFYSMAAFEWSALKFIWYTFFMYFSMLYFTFYGMMTTA LTPNHNVAAVISAPFYMLWHLFSGFMIPHKRIPIWWRWYYWANPIAWTLYGLLTSQYGDDGRAMMLPDGNQMAPVKLVLRELLGYKHEFLGVAGVMVVGF CLLFAVIFAFAIKSFNFQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10043305 [exp]	0	1
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	1.7	0.9407
AT1G31740		BGAL15	beta-galactosidase 15 (.1)		Lus10043422 [exp]	4.0	0.8937
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10010587 [exp]	5.5	0.8631
AT3G07870			F-box and associated interacti...		Lus10036105 [exp]	6.5	0.8516
AT3G52740			unknown protein		Lus10014197 [exp]	7.5	0.8903
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	11.5	0.8838
AT2G23110			Late embryogenesis abundant pr...		Lus10042745 [exp]	13.3	0.8775
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	14.3	0.8620
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10036684 [exp]	15.7	0.8022
AT2G16630			Pollen Ole e 1 allergen and ex...		Lus10026279 [exp]	18.4	0.8924

Compare expression of checked genes

Lus10043305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.