Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24750 382 / 2e-134 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT3G08920 101 / 1e-25 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT2G42220 96 / 3e-23 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G27700 54 / 1e-08 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G66040 47 / 1e-06 STR16 sulfurtransferase protein 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019454 [exp] 534 / 0 AT4G24750 390 / 2e-137 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10004811 [exp] 104 / 1e-26 AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10002485 [exp] 103 / 2e-26 AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10021032 [exp] 89 / 2e-20 AT2G42220 304 / 2e-105 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10023820 [exp] 86 / 1e-19 AT2G42220 302 / 1e-104 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10012566 [exp] 50 / 3e-07 AT5G66040 129 / 1e-39 sulfurtransferase protein 16 (.1.2) Lus10005635 [exp] 49 / 1e-06 AT5G66040 144 / 1e-44 sulfurtransferase protein 16 (.1.2) Lus10023243 [exp] 46 / 9e-06 AT4G27700 305 / 7e-106 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10041843 [exp] 44 / 6e-05 AT4G35770 182 / 6e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G086100 [exp] 418 / 2e-148 AT4G24750 416 / 1e-147 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.006G100600 [exp] 100 / 2e-25 AT3G08920 238 / 6e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.006G059200 [exp] 94 / 2e-22 AT2G42220 318 / 4e-111 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.002G014900 [exp] 50 / 3e-07 AT4G35770 151 / 8e-47 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.012G020700 [exp] 47 / 4e-06 AT4G27700 262 / 4e-89 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G008000 [exp] 47 / 5e-06 AT4G27700 268 / 2e-91 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.014G131300 [exp] 44 / 1e-05 AT2G21045 204 / 2e-68 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G106400 [exp] 42 / 0.0004 AT4G35770 199 / 1e-64 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10043306 pacid=23168004 polypeptide=Lus10043306 locus=Lus10043306.g ID=Lus10043306.BGIv1.0 annot-version=v1.0 ATGGAGACTCTGGGACTTCCTTCTCTCAACCTCCTTCGACTTTCTCATTCCCCTTCTCTCATACGGAAGACCCCGAGCAATGTGCAGCTCTCAGTGAAGG AAATCGCAATGGCGGCTACTCTCAAACTTAGTTCCACTGTCAAAACAAGTCAAAATTCTCGTTGGAGGAGCTCTGTGGAAATTCGAGCTGCCGATGAGGA CCTCGAGCTGAAGCAGATGAAAGATATGGCCGCTGCTAAGAAGAGATGGGATGTTATGATTAGGGAAGGAAAAGTAAAGATGCTTACCCCCAGGGAAGCA GGGTATGCAATTCAACTCTCCAACAAAACTCTTCTGGATGTTAGGCCCTCGGTTGAACATGAAAAGGCATGGGTTAAAGGCTCAACATGGATTCCTATGT TTGAAGTTGATAGCAACGTTGACATTGGAGCCATTTCAAAGAAGATCACAAGCTTTGCCATGGGGGGTTGGTGGAGTGGCATGCCTACAGTATCTTACAA CAACCAGTTCTTATCTAAGGTGGAGGAGAAGTTCCCACAGGACACGGACCTCATCGTTGCATGCCAGAAAGGACTAAGATCTCTTGCTGCATGTGAACTA TTGCAGAGGGCTGGCTATACGAACCTTTTCTGGGTTCAAGGGGGGCTAGAGGCTGCAGAAGAAGAGGATCTTGTACGAGAAGGTCCCGTGCCTTTAAAGT TTGCTGGGCTAGGTGGCGTTTCTGAATTCCTTGGGTGGACAGACCAACAAAGAGCTGCTGCAGCCAGAGAAGGGTGGGGATACCGCTTACTTTTCTCCGC TCGTCTGGTTGGTTTGTTTATTGCTGCTGATGCATTCTATATTGGGGTTCAGCAAGTGGGTCATTACATTCAAGAAATGAAGTCACTTTAA
AA sequence Show only first row Show all	>Lus10043306 pacid=23168004 polypeptide=Lus10043306 locus=Lus10043306.g ID=Lus10043306.BGIv1.0 annot-version=v1.0 METLGLPSLNLLRLSHSPSLIRKTPSNVQLSVKEIAMAATLKLSSTVKTSQNSRWRSSVEIRAADEDLELKQMKDMAAAKKRWDVMIREGKVKMLTPREA GYAIQLSNKTLLDVRPSVEHEKAWVKGSTWIPMFEVDSNVDIGAISKKITSFAMGGWWSGMPTVSYNNQFLSKVEEKFPQDTDLIVACQKGLRSLAACEL LQRAGYTNLFWVQGGLEAAEEEDLVREGPVPLKFAGLGGVSEFLGWTDQQRAAAAREGWGYRLLFSARLVGLFIAADAFYIGVQQVGHYIQEMKSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24750			Rhodanese/Cell cycle control p...		Lus10043306 [exp]	0	1
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10006949 [exp]	2.4	0.9641
AT1G32470			Single hybrid motif superfamil...		Lus10030979 [exp]	2.8	0.9548
AT1G32470			Single hybrid motif superfamil...		Lus10035374 [exp]	4.5	0.9480
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10016811 [exp]	9.0	0.9511
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10038292 [exp]	9.2	0.9472
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10026006 [exp]	11.5	0.9453
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	12.4	0.9430
AT1G12250			Pentapeptide repeat-containing...		Lus10032239 [exp]	15.3	0.9415
AT5G16810			Protein kinase superfamily pro...		Lus10040743 [exp]	15.5	0.9374
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012886 [exp]	16.4	0.9332

Compare expression of checked genes

Lus10043306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.