Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48280 433 / 3e-148 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48270 433 / 4e-148 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48310 431 / 3e-147 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48290 427 / 7e-146 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT3G48320 415 / 6e-141 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT3G48300 408 / 3e-138 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT2G30770 401 / 2e-135 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT2G30750 394 / 8e-133 CYP71A12 cytochrome P450, family 71, subfamily A, polypeptide 12 (.1) AT4G13310 393 / 3e-132 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT1G11610 392 / 1e-131 CYP71A18 "cytochrome P450, family 71, subfamily A, polypeptide 18", cytochrome P450, family 71, subfamily A, polypeptide 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019457 [exp] 832 / 0 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 573 / 0 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10041951 [exp] 553 / 0 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10029787 [exp] 387 / 7e-130 AT3G48310 407 / 7e-138 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10030924 [exp] 384 / 4e-128 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10009903 [exp] 381 / 2e-127 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10016601 [exp] 376 / 2e-125 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10034505 [exp] 374 / 9e-125 AT4G31500 507 / 7e-177 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10004517 [exp] 370 / 2e-123 AT4G31500 489 / 6e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085800 [exp] 571 / 0 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089900 [exp] 431 / 3e-147 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.015G086000 [exp] 427 / 1e-145 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.012G090000 [exp] 426 / 4e-145 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.012G089600 [exp] 395 / 5e-133 AT3G48310 387 / 6e-130 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.008G184000 [exp] 390 / 3e-131 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184400 [exp] 390 / 7e-131 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.016G137600 [exp] 386 / 2e-129 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.008G184900 [exp] 385 / 3e-129 AT3G26320 529 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.002G025800 [exp] 383 / 3e-128 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10043308 pacid=23168122 polypeptide=Lus10043308 locus=Lus10043308.g ID=Lus10043308.BGIv1.0 annot-version=v1.0 ATGTGGATGCAAGAGATCACTTCATCATTTTCGATCCTCTATGTCCTCGGATTCCTCCTACTCCTGCGCCTCTTCTTCTCCTCCAAATGGCCCAGGAAGA AGCTCCTCCTTCCTCCATCCCCTTTCAAGCTCCCAGTTCTGGGAAACCTCCACCAACTAGGCTCCCATCCACACCGTTCCCTCCACTCCATGTCCCAAAC CCACGGCCCCATCATGCTCTTGCACCTCGGCCGATCCCCGACCTTGGTCATCTCCTCCCCTGAATCCGCCAGGGAGATTTTGAAAACCCACGACCTCGAT TTCTCCAACCGTACCGACTCCATCATCGCCAGGAGGCTCCTCTACAACTACAAGGACCTGTCCCTGTCTCCCTACGGCGAGTACTGGAGGCAGATGAGGA GCATCTGCGTCATGCAGCTCCTCAGCACCAAGAAGGTCCAGTCCTTCCGCCGCGTCAGAGAGGAAGAAGCCAATTTGATGGTTGACCGGATTTTGCAAAA ACATCAGCAGGCAGTGGATTTGGGGGAGGTGTTTTCCGTGCTGACTGAGGATGTTATATCCAGAGTGGCGTTTGGGAAGAAGTACAGGAAGCTGAAGGAG ATGCTGAAAGAGATGGCTGTTCTGTTGGGGATTTTCAATGTGGCTGACTTTGTGCCGTGGCTGGGATGGATTAACCGTTTCAACGGGCTGAATGGTAGAG TGGAGAGGGTGTTTGCGGAATTCGATCAGTTTTTGGATGAAGTTGTTGATGAACATTTGGCCAGGAGGAGGAGGAGGAGGCAGGGGAGTAGTACTGTAGA CGAAACAGAGAAGGAGGAGGAACAGAAGGATTTCGTTGATGTTTTGCTTGATGCACAGGCGGAGAATGAGCTTATGGATAGAGACAGCATCAAAGCCATC ATTCTCGACATGTTTGGAGCGGGAAGCGACACAACATTCACAGCACTGGAATGGGCAATGACAGAGGTCCTCAAGCATCCAAGAGTGACCAACAAACTCC AGCAAGAGATCAGAAGCGTGGTGGGTAACAGCAACCCAACAGTAAAAGAAGAGGACATAGAGAGAATGCCATACTTAAAAGCTGTAATCAAGGAATCACT CCGCCTTCACCCTCCAATCCCGCTGCTGGTTCCAAGGGCATCGACAAAGGACACCAAAGTACTCGGCTACGACATTGCAGCCAAGACAGGGGTCCTTATC AACGCCTGGGCAATCGGGAGGGACCCGACTGCTTGGGAGGATCCTGCAGAGTTCAATCCAGAGAGATTTATGGACGTGGGGAGTGTAACAGATTACAAGG GTCAGGATTTCCATTTAATCCCCTTTGGTGCTGGAAGGAGGGGATGCCCTGGAATTACGTTTGCGGCTGCTGTACTGGAGATAGCCATGGCTGCTCTGCT TCACAAGTTTGACTGGTCGTTCCCTGGTGGAGCAAAGGCTGAGGATTTGGACGTGAGTGAGGCTCCTGGAATGGCTGTCCAGCGCAAATTTCCTCTTCTG GTTATTGCTACTCCCCACAAGTTTCAGGAATGA
AA sequence Show only first row Show all	>Lus10043308 pacid=23168122 polypeptide=Lus10043308 locus=Lus10043308.g ID=Lus10043308.BGIv1.0 annot-version=v1.0 MWMQEITSSFSILYVLGFLLLLRLFFSSKWPRKKLLLPPSPFKLPVLGNLHQLGSHPHRSLHSMSQTHGPIMLLHLGRSPTLVISSPESAREILKTHDLD FSNRTDSIIARRLLYNYKDLSLSPYGEYWRQMRSICVMQLLSTKKVQSFRRVREEEANLMVDRILQKHQQAVDLGEVFSVLTEDVISRVAFGKKYRKLKE MLKEMAVLLGIFNVADFVPWLGWINRFNGLNGRVERVFAEFDQFLDEVVDEHLARRRRRRQGSSTVDETEKEEEQKDFVDVLLDAQAENELMDRDSIKAI ILDMFGAGSDTTFTALEWAMTEVLKHPRVTNKLQQEIRSVVGNSNPTVKEEDIERMPYLKAVIKESLRLHPPIPLLVPRASTKDTKVLGYDIAAKTGVLI NAWAIGRDPTAWEDPAEFNPERFMDVGSVTDYKGQDFHLIPFGAGRRGCPGITFAAAVLEIAMAALLHKFDWSFPGGAKAEDLDVSEAPGMAVQRKFPLL VIATPHKFQE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	0	1
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10010545 [exp]	1.7	0.9854
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10010885 [exp]	3.2	0.9794
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043313 [exp]	4.2	0.9766
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	4.5	0.9691
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038200 [exp]	4.9	0.9809
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	5.3	0.9800
AT5G39120			RmlC-like cupins superfamily p...		Lus10006538 [exp]	5.5	0.9802
					Lus10041161 [exp]	5.7	0.9705
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021029 [exp]	6.9	0.9639
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021394 [exp]	7.9	0.9704

Compare expression of checked genes

Lus10043308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.