Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24740 730 / 0 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT3G53570 626 / 0 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G32660 502 / 6e-178 AME3 Protein kinase superfamily protein (.1.2.3) AT1G13350 162 / 2e-43 Protein kinase superfamily protein (.1.2) AT3G53640 161 / 2e-43 Protein kinase superfamily protein (.1) AT5G35980 160 / 7e-43 YAK1 yeast YAK1-related gene 1 (.1.2) AT3G25840 159 / 1e-42 Protein kinase superfamily protein (.1.2) AT3G17750 158 / 1e-41 Protein kinase superfamily protein (.1) AT2G40120 155 / 2e-41 Protein kinase superfamily protein (.1) AT1G73460 155 / 9e-41 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019458 [exp] 888 / 0 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10036878 [exp] 651 / 0 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10025301 [exp] 644 / 0 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10024431 [exp] 643 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10006230 [exp] 274 / 2e-90 AT4G24740 276 / 8e-93 FUS3-complementing gene 2 (.1.2) Lus10027636 [exp] 217 / 6e-69 AT4G24740 187 / 6e-59 FUS3-complementing gene 2 (.1.2) Lus10009542 [exp] 161 / 8e-43 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10020366 [exp] 160 / 2e-42 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10031902 [exp] 160 / 2e-42 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085700 [exp] 752 / 0 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 749 / 0 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.016G079900 [exp] 657 / 0 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.010G049100 [exp] 645 / 0 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.006G213400 [exp] 642 / 0 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G244400 [exp] 539 / 0 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G043400 [exp] 166 / 9e-45 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.010G126900 [exp] 165 / 4e-44 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.013G075300 [exp] 165 / 4e-44 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.005G102100 [exp] 157 / 2e-43 AT2G17530 703 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10043309 pacid=23168149 polypeptide=Lus10043309 locus=Lus10043309.g ID=Lus10043309.BGIv1.0 annot-version=v1.0 ATGGAGACGGAACGCGTGGTCGAATTTCCGCTGGCTCACCTCGATCGGAGGCCTCGGAAGAGGGCTCGTCTGGGCTGGGATGTCCCTGTTATCCCTAAGG CTCAGGTAGGATTGTATTGTGGACAAGAAATTGGTGTACCAAGCTTTGACTCTGCTGGAGCAAACTCAGACTATACCATCACATCTAGTTCTCTATTTGA TAATGCTGTTGCTCGAAATGGGTCTCCCCCATGGCGGGAAGACGACAAAGACGGCCATTACATGTTTGCTATTGGGGAAAATTTAACTTCACGCTATAAG ATTCACAGCAAAATGGGTGAAGGAACTTTTGGCCAGGTCCTAGAATGCTGGGACAGGGAAAGGAAAGAAATGGTGGCAATTAAAATTGTTCGCGGTATCA AGAAATATCGTGAGGCAGCCATGATTGAAATTGAGATGTTGCAGCAACTTGGTAAACATGATAGGGGTGGTGAACGTTGTGTGCAGTTACGGAACTGGTT TGACTATCGTAATCATATATGTATTGTCTTTGAGAAGCTTGGATCAAGCTTATACGATTTTCTTCGCAAAAACAATTATCGGTCATTTCCCATTGATCTT GTCCGAGAGATTGGCAGACAACTGTTGGAATTTATGCATGACTTACAGCTCATTCACACAGATTTGAAGCCTGAGAATATTCTCTTAGTTTCATCAGACT ATGTGAAGGTGCCTGATTACAGGGGTTCTTCTCGTTCCCCAAGGGACAGTTCTTACTTCAAAAGAGTTCCAAAGTCAAGTGCAATAAAGGTTATTGATTT TGGGAGCACAACTTATGATCGTCAAGATCAGAGCTACATTGTGTCAACCAGGCATTATCGAGCTCCAGAAGTCATCCTTGGTATGGGTTGGAGCTATCCA TGTGATGTTTGGAGCATTGGTTGTATTCTAGTGGAGTTGTGCACGGGTGAAGCGTTGTTTCAAACACATGAGAACTTGGAGCACCTTGCAATGATGGAGC GTGTGCTTGGACCTTTACCTCAGCACATGTTGAAAAAAGCAGATCGACATGCTGACAAGTATGTGAGAAGGGGTAAACTCGACTGGCCTGATGGTGCTAC ATCCAGGGAGAGCATCAGGGCAGTATTAAAGCTTCCTAGGCTTCAGAATTTGGTAATGCAGCATGTGGACCATTCTGCGGGCGACTTGATTCACCTGTTG CAAGGACTCCTTAGGTATGATCCTTTGGAAAGGCTAACTGCACGTGAAGCTTTGAGGCATTCCTTCTTCACGAGGGACCTTTTCAGGAGGTGA
AA sequence Show only first row Show all	>Lus10043309 pacid=23168149 polypeptide=Lus10043309 locus=Lus10043309.g ID=Lus10043309.BGIv1.0 annot-version=v1.0 METERVVEFPLAHLDRRPRKRARLGWDVPVIPKAQVGLYCGQEIGVPSFDSAGANSDYTITSSSLFDNAVARNGSPPWREDDKDGHYMFAIGENLTSRYK IHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKHDRGGERCVQLRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDL VREIGRQLLEFMHDLQLIHTDLKPENILLVSSDYVKVPDYRGSSRSPRDSSYFKRVPKSSAIKVIDFGSTTYDRQDQSYIVSTRHYRAPEVILGMGWSYP CDVWSIGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKKADRHADKYVRRGKLDWPDGATSRESIRAVLKLPRLQNLVMQHVDHSAGDLIHLL QGLLRYDPLERLTAREALRHSFFTRDLFRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	0	1
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10019458 [exp]	1.0	0.9669
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10032529 [exp]	2.2	0.9470
AT2G14680		MEE13	maternal effect embryo arrest ...		Lus10003821 [exp]	3.2	0.9629
AT5G61200			unknown protein		Lus10003464 [exp]	4.6	0.9340
AT4G19160			unknown protein		Lus10038244 [exp]	4.9	0.9523
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	5.5	0.9465
AT5G18640			alpha/beta-Hydrolases superfam...		Lus10033968 [exp]	6.2	0.9406
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10027932 [exp]	6.9	0.9378
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	7.3	0.9453
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	7.7	0.9343

Compare expression of checked genes

Lus10043309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.