Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48280 289 / 2e-93 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G26300 280 / 1e-89 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT1G11610 278 / 3e-89 CYP71A18 "cytochrome P450, family 71, subfamily A, polypeptide 18", cytochrome P450, family 71, subfamily A, polypeptide 18 (.1.2) AT2G30750 278 / 6e-89 CYP71A12 cytochrome P450, family 71, subfamily A, polypeptide 12 (.1) AT4G13290 277 / 8e-89 CYP71A19 "cytochrome P450, family 71, subfamily A, polypeptide 19", cytochrome P450, family 71, subfamily A, polypeptide 19 (.1) AT2G30770 276 / 3e-88 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT5G24950 274 / 2e-87 CYP71A15 "cytochrome P450, family 71, subfamily A, polypeptide 15", cytochrome P450, family 71, subfamily A, polypeptide 15 (.1) AT3G26310 273 / 3e-87 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT1G13080 268 / 6e-85 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT2G02580 255 / 4e-80 CYP71B9 "cytochrome P450, family 71, subfamily B, polypeptide 9", cytochrome P450, family 71, subfamily B, polypeptide 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019459 [exp] 394 / 6e-134 AT2G30770 409 / 3e-138 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10019457 [exp] 294 / 3e-95 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10031674 [exp] 250 / 6e-78 AT3G26300 399 / 3e-134 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10019461 [exp] 241 / 2e-77 AT3G26230 258 / 3e-83 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Lus10019463 [exp] 239 / 5e-77 AT3G26270 217 / 1e-67 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) Lus10043313 [exp] 243 / 2e-75 AT3G48280 390 / 3e-131 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10026252 [exp] 246 / 1e-73 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10017961 [exp] 226 / 1e-68 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10029787 [exp] 225 / 1e-68 AT3G48310 407 / 7e-138 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085600 [exp] 384 / 2e-130 AT3G48270 378 / 1e-126 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.016G137600 [exp] 296 / 1e-95 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089600 [exp] 271 / 5e-86 AT3G48310 387 / 6e-130 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.007G083300 [exp] 248 / 1e-77 AT3G26330 363 / 7e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.016G137400 [exp] 243 / 5e-76 AT3G48310 366 / 4e-123 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.007G083000 [exp] 241 / 7e-75 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G083500 [exp] 240 / 1e-74 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G082900 [exp] 240 / 1e-74 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 240 / 2e-74 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084800 [exp] 227 / 2e-69 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10043310 pacid=23168000 polypeptide=Lus10043310 locus=Lus10043310.g ID=Lus10043310.BGIv1.0 annot-version=v1.0 ATGTCTCTATCTTCTTCTCACGTTCTACAACACTCCAAAAATCAATCTGCTATGCCCCCTTCACCTCCCAAGCTTCCCATAATCGGAAACCTCCACCAGC TCAGCACACTCCTCCACCGCTCCATTCAGTCTCTTTCCCGCAAGTACGGACCTGTAATGCTGATCCACATGGGGAAAGCTCCCACCTTGGCTGGCTCATC TGAGGACGCAGCTCGAGAGATTATGAAAAGCCACGACGCCAGTTTCTCCTGTAGACCTCAAACAAGGGCCACCAACGCCTTATTCTCCAGGTGCACTGAC GTGGCGTTCTCTCCCTACAGCGAGTACTGGAGGGCAGTCAAGAAGATTTGCGTGCAGCAGCTTCTGAGCCAGAGGAGAGTTCAGGAATTCCAGTTTGTTA GGGAGGAGGAAGTTGCTGCTGTGGTTGAGATGATCCGTGTTAAAAGTAAAAAGAATCTCGCTGTTGATGTCAGCGAGATTCTTCTCACCCTTTCCAACAT CATCATATCAAGATCTGCTCTTGGGAGGATAGTCTTGGGAGATCTTGTGGATATATTACTCCAACTTCAGAGGGATGACATGTTTGAGATTCACCTGAGC AGAGAGAATCTTAGAGCAATCCTCATGGACATGTTCGTGGGAGGAACAAACACAACATCGGCAGTCATGGAGTGGGCAATGTCACAACTTGTGAAGAACC CACCAATAATGAAGAAAGCCCAGGAAGAGATAAGGAGAGCAGTGGGGAACAAACGCAAAATCAGCGAGGCAGAGTTGAATCAGATGCCGTACCTGAAGTC CATCCTGAAAGAGACACTGATTGCCAGGGAGACATCCGAGGCAGTGACGCTTCAAGGATACGACATCCCATCAAAGAGCAGAGTGCTGGTGAATGCATGG GCGATTCAGAGGGATCCAACGACATGGGGGGACGACGCTGAAGAGTTCATCCCGGAGAGGTTCGCAGGAAAGTCTTCGTCTGTGGATTTTAAAGGTCAAC ACAGTGAATTCATCCCGTTTGGGTTTGGGAGAAGGACGTGCCCTGGAATGGGATTCGCAGTTGCGGTAGCTGAGCTTGTGCTGGCAAACCTGCTGTGCTG GTTTGACTGGAGGTTGCCTGATGGGGAAATTGCAGAGGATTTGGATTTGAGCGAGACCAATGCTTTGATTGTGCATAAGAAAAAGCCGCTTGTTTTGATT CCCAGTTGCGTAGCATGA
AA sequence Show only first row Show all	>Lus10043310 pacid=23168000 polypeptide=Lus10043310 locus=Lus10043310.g ID=Lus10043310.BGIv1.0 annot-version=v1.0 MSLSSSHVLQHSKNQSAMPPSPPKLPIIGNLHQLSTLLHRSIQSLSRKYGPVMLIHMGKAPTLAGSSEDAAREIMKSHDASFSCRPQTRATNALFSRCTD VAFSPYSEYWRAVKKICVQQLLSQRRVQEFQFVREEEVAAVVEMIRVKSKKNLAVDVSEILLTLSNIIISRSALGRIVLGDLVDILLQLQRDDMFEIHLS RENLRAILMDMFVGGTNTTSAVMEWAMSQLVKNPPIMKKAQEEIRRAVGNKRKISEAELNQMPYLKSILKETLIARETSEAVTLQGYDIPSKSRVLVNAW AIQRDPTTWGDDAEEFIPERFAGKSSSVDFKGQHSEFIPFGFGRRTCPGMGFAVAVAELVLANLLCWFDWRLPDGEIAEDLDLSETNALIVHKKKPLVLI PSCVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10043310 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10029280 [exp]	1.0	0.9733
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029821 [exp]	4.7	0.9379
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024910 [exp]	4.9	0.9357
AT5G55690	MADS		MADS-box transcription factor ...		Lus10014095 [exp]	8.2	0.9103
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	8.2	0.9527
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	10.1	0.9502
					Lus10015828 [exp]	11.0	0.9484
					Lus10034718 [exp]	11.1	0.8833
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10010281 [exp]	11.8	0.9084
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	13.0	0.9482

Compare expression of checked genes

Lus10043310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.