Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26230 227 / 3e-72 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT1G13080 222 / 1e-71 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26270 215 / 1e-67 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT3G26180 206 / 9e-66 CYP71B20 "cytochrome P450, family 71, subfamily B, polypeptide 20", cytochrome P450, family 71, subfamily B, polypeptide 20 (.1.2) AT2G45550 207 / 2e-64 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G13110 206 / 3e-64 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT3G26280 206 / 4e-64 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT3G26210 206 / 4e-64 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT2G45560 205 / 1e-63 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45580 204 / 4e-63 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019461 [exp] 415 / 6e-149 AT3G26230 258 / 3e-83 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Lus10019459 [exp] 247 / 1e-79 AT2G30770 409 / 3e-138 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10043313 [exp] 238 / 3e-76 AT3G48280 390 / 3e-131 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019463 [exp] 229 / 6e-76 AT3G26270 217 / 1e-67 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) Lus10043310 [exp] 229 / 6e-74 AT2G30770 329 / 4e-109 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10029787 [exp] 231 / 9e-74 AT3G48310 407 / 7e-138 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10016601 [exp] 229 / 8e-73 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10030708 [exp] 225 / 3e-71 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10012767 [exp] 222 / 5e-70 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089600 [exp] 266 / 3e-87 AT3G48310 387 / 6e-130 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.015G085600 [exp] 258 / 6e-84 AT3G48270 378 / 1e-126 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.016G137400 [exp] 242 / 6e-79 AT3G48310 366 / 4e-123 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.016G137600 [exp] 242 / 9e-78 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.015G085800 [exp] 224 / 1e-70 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089900 [exp] 216 / 1e-67 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.008G184000 [exp] 214 / 3e-67 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.015G086000 [exp] 213 / 7e-67 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.008G184400 [exp] 213 / 1e-66 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.012G090000 [exp] 212 / 2e-66 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10043312 pacid=23167973 polypeptide=Lus10043312 locus=Lus10043312.g ID=Lus10043312.BGIv1.0 annot-version=v1.0 ATGAAAGCCGTCGTCATGGACATGTTTATCGGGGGAACAGACACGACAGCGTCGACAATGGATTGGGCAATGGCAGAGATGATGAAGAACCCAGCCATTC TAAAGAAAGCTCAAGAAGAAGTAAGGAAAGTGGTGGGGAAGAAACCCAAGGTGGAAGAGAGCGACCTAGACAACTTGAGCTACTTGAAATGTGTGATCAA GGAGACACTAAGGCTCCATGTGTCAGGGATCATCCCTCGGCAGACCACAAGCGCGGTGAAACTTAACGGCTATGACATTCCAGCGAACACGAGAGTGTTG ATAAACACATGGGCGATCCAGAGGGACGAGAAGCAGTGGGAGAGGCCCGAGGAGTTTGATCCGGAGAGATTCGTGGGGAACGAGCTCGATTTCAGAGGGC AGCACAAGGAGTACCTTCCGTTCGGTACTGGGAGGAGGATATGCCCCGGGATATCGTATGCATTGAAGGAGGTTGAGTATGTGGTGGCCAATTTGATTTA CAAGTTCGATTGGGGAGTCGGAGGTGGTGGGCGTGGGGAGGATTTGGATATGACTGATAATTTTGATATGGTCATCCGTAGGAAGATGCCTCTTGTTCTT CTCCCTACACTTCATCACTTCTCAACTTAA
AA sequence Show only first row Show all	>Lus10043312 pacid=23167973 polypeptide=Lus10043312 locus=Lus10043312.g ID=Lus10043312.BGIv1.0 annot-version=v1.0 MKAVVMDMFIGGTDTTASTMDWAMAEMMKNPAILKKAQEEVRKVVGKKPKVEESDLDNLSYLKCVIKETLRLHVSGIIPRQTTSAVKLNGYDIPANTRVL INTWAIQRDEKQWERPEEFDPERFVGNELDFRGQHKEYLPFGTGRRICPGISYALKEVEYVVANLIYKFDWGVGGGGRGEDLDMTDNFDMVIRRKMPLVL LPTLHHFST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Lus10043312 [exp]	0	1
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012724 [exp]	1.0	0.9949
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10011346 [exp]	2.0	0.9919
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	3.5	0.9946
AT1G14550			Peroxidase superfamily protein...		Lus10009900 [exp]	3.7	0.9906
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10005107 [exp]	3.9	0.9910
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10030531 [exp]	4.2	0.9934
AT5G39150			RmlC-like cupins superfamily p...		Lus10006536 [exp]	5.5	0.9882
AT5G39120			RmlC-like cupins superfamily p...		Lus10006538 [exp]	6.2	0.9861
AT1G14540			Peroxidase superfamily protein...		Lus10009904 [exp]	6.6	0.9879
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008917 [exp]	7.9	0.9898

Compare expression of checked genes

Lus10043312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.