Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48310 343 / 1e-112 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48290 340 / 7e-112 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT3G48280 339 / 3e-111 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT1G11610 334 / 3e-109 CYP71A18 "cytochrome P450, family 71, subfamily A, polypeptide 18", cytochrome P450, family 71, subfamily A, polypeptide 18 (.1.2) AT2G30770 332 / 3e-108 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT4G13310 325 / 7e-106 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT2G30750 324 / 3e-105 CYP71A12 cytochrome P450, family 71, subfamily A, polypeptide 12 (.1) AT3G26330 322 / 2e-104 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G48300 321 / 2e-104 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT3G48270 320 / 9e-104 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019463 [exp] 465 / 3e-164 AT3G26270 217 / 1e-67 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) Lus10019459 [exp] 459 / 5e-158 AT2G30770 409 / 3e-138 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10019462 [exp] 399 / 3e-138 AT3G48310 168 / 3e-49 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10029787 [exp] 397 / 1e-133 AT3G48310 407 / 7e-138 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10017961 [exp] 362 / 7e-120 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10016601 [exp] 355 / 3e-117 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10041951 [exp] 348 / 2e-114 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030924 [exp] 345 / 5e-113 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10030708 [exp] 344 / 7e-113 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089600 [exp] 483 / 2e-167 AT3G48310 387 / 6e-130 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.015G085600 [exp] 464 / 5e-160 AT3G48270 378 / 1e-126 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.016G137600 [exp] 407 / 1e-137 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.016G137400 [exp] 380 / 5e-128 AT3G48310 366 / 4e-123 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.015G085800 [exp] 372 / 9e-124 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089900 [exp] 355 / 2e-117 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.012G090000 [exp] 353 / 9e-117 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.008G184000 [exp] 353 / 1e-116 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G223500 [exp] 352 / 5e-116 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G086000 [exp] 349 / 6e-115 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10043313 pacid=23168053 polypeptide=Lus10043313 locus=Lus10043313.g ID=Lus10043313.BGIv1.0 annot-version=v1.0 ATGTCGTCTGAACTCTTATTGGCCGTTGCTTCAATCCTTCTCTTCTCAGGAGTTGTCTATCTACTCAGAAAGATGAATGGAAAGAGCAAGCTAAACTTGC CGCCATCTCCACCATCTCTGCCTCTAATAGGAAACCTCTTCCAAATGAGCAAGCTTCCTTACCGTTCCCTCCGCGCCCTCTCCACTCAATACGGTCCCCT GATGCTCGTCAAGCTCGGAAGCATTCCGTACGTGATCGTCTCGTCCGCGGACGCCATCCAAGAGCTCACCGACAAGGACCACGACGTCATCTTCTCCGGC AGGCCGCAGTGGAAGTCGTCGGACGCGCTCTTCGGTGGGAGCACCGACATCATCTTCTCTTCCTACGGGGAGTACTGGCGGCAGATGAAGAGGATATGCA TGCTGGAAGTGCTGAGCCAGAGGAGGGTGAATCAGTTCCGCAACATCCGGGAGCAAGAGGTCCAACACCTGGTGGGCATTCTGAAAGTTGCGTCAAAAGA GCGAACCACTGTTGATCTAAGCGATGCCATCTCTACTTTCACGAATACGGTGATCTCGAGGGCGGCTTTTGGGAAGACGTACCAGCAGATTAACGGTGGA AATGCAGGGGAGAAGAATTTCGTGCCGCTGTTGAGGAGGGCGGTGGATATATTGGCGGAGTTTTGCTTTAAGGATTCGTTCCCGTATTTGGGATGGGTTG ATGTGTTGAATGGGTTTGATTCCAAGGTTAAGAGGGTGTCTAAGGAAGTAAGCGATTTCTTGGACAGGGTGATTGATGACCACAAATCGGCTATGGAGAA TGTTGATCAGGATGATGACGATGAAAAAGTGTCTGCAGAGAGGCAGCTGGATATTGTTGATATTCTGCTGCGTGTTCAGAAGGAAAGGGAGCTTGACTTT CATTTCACCGACGCAAACATTAAAGCTACTCTCTTGGATATGTTTGCGGGAGGAACCGACACGATTGCAACGACATTGGAATGGGTGATGTCGGAGCTAA TAAAACATCCATCGATCATGAAGAGAGCACAGGAAGAAGTAAGGAAGGTAGTTGGGTACAAGTCCAAAATAGAGGAAGCTGATATGAATCAGATGGTGTA CCTGAAATGCATCATCAAGGAGACACTCAGGCTGCACGCGCCGGCTCCAGTCTCCCTACGCAAGACATCCGAAGCAGTCAAGCTGAAAGGCTACGACATT CCGCAGGGAATGATGGTGATGATCAACTTGTGGGCGGTAATGAGGGACCCTGAGGTCTGGGACACCCCTGAGGAATTTGTTCCTGACAGGTTTCTGAACG ACCCGGTCGATTTCAAGGGCCAGACTGGGAAGTTCGTCCCTTTCGGTGCTGGGAGGAGGCTGTGTCCGGGGATGACCTTGGCGCTGGTGGAAGTTGAACT TGTGGCTGCCAACTTGCTGTGTTGGTTCGATTGGGAGCTGCCTCAGGGAGTGGTTGATTTGGATATGAGTGAGATCAACTCTGTTGTTCTTCGTAGGGAG AATCCTCTTTGTCTAGTTCCAGTTTTGACACACCAAAACGTTGAATAG
AA sequence Show only first row Show all	>Lus10043313 pacid=23168053 polypeptide=Lus10043313 locus=Lus10043313.g ID=Lus10043313.BGIv1.0 annot-version=v1.0 MSSELLLAVASILLFSGVVYLLRKMNGKSKLNLPPSPPSLPLIGNLFQMSKLPYRSLRALSTQYGPLMLVKLGSIPYVIVSSADAIQELTDKDHDVIFSG RPQWKSSDALFGGSTDIIFSSYGEYWRQMKRICMLEVLSQRRVNQFRNIREQEVQHLVGILKVASKERTTVDLSDAISTFTNTVISRAAFGKTYQQINGG NAGEKNFVPLLRRAVDILAEFCFKDSFPYLGWVDVLNGFDSKVKRVSKEVSDFLDRVIDDHKSAMENVDQDDDDEKVSAERQLDIVDILLRVQKERELDF HFTDANIKATLLDMFAGGTDTIATTLEWVMSELIKHPSIMKRAQEEVRKVVGYKSKIEEADMNQMVYLKCIIKETLRLHAPAPVSLRKTSEAVKLKGYDI PQGMMVMINLWAVMRDPEVWDTPEEFVPDRFLNDPVDFKGQTGKFVPFGAGRRLCPGMTLALVEVELVAANLLCWFDWELPQGVVDLDMSEINSVVLRRE NPLCLVPVLTHQNVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043313 [exp]	0	1
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	1.0	0.9878
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032641 [exp]	1.4	0.9768
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	2.8	0.9761
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	4.2	0.9766
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10010885 [exp]	4.5	0.9740
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10019457 [exp]	6.0	0.9582
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10019462 [exp]	6.3	0.9633
AT4G29700			Alkaline-phosphatase-like fami...		Lus10000041 [exp]	8.1	0.9575
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	9.2	0.9557
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10012609 [exp]	10.2	0.9425

Compare expression of checked genes

Lus10043313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.