Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50210 996 / 0 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) AT1G67810 194 / 9e-57 SUFE2 sulfur E2 (.1) AT4G26500 78 / 5e-15 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019464 [exp] 1368 / 0 AT5G50210 1016 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10006468 [exp] 166 / 1e-46 AT1G67810 189 / 1e-59 sulfur E2 (.1) Lus10011408 [exp] 151 / 2e-41 AT1G67810 167 / 3e-51 sulfur E2 (.1) Lus10032905 [exp] 80 / 1e-15 AT4G26500 380 / 4e-131 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10015605 [exp] 79 / 4e-15 AT4G26500 387 / 2e-133 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085300 [exp] 1047 / 0 AT5G50210 989 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.012G089500 [exp] 408 / 3e-137 AT5G50210 401 / 1e-134 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.001G468300 [exp] 86 / 8e-18 AT4G26500 392 / 5e-136 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.011G165400 [exp] 79 / 2e-15 AT4G26500 404 / 1e-140 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.005G112150 [exp] 56 / 2e-09 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02445 [flax] [poplar] NadA Quinolinate synthetase A protein CL0233 [flax] [poplar] SufE_NifU PF02657 [flax] [poplar] SufE Fe-S metabolism associated domain
Representative CDS sequence Show only first row Show all	>Lus10043314 pacid=23168416 polypeptide=Lus10043314 locus=Lus10043314.g ID=Lus10043314.BGIv1.0 annot-version=v1.0 ATGGAATACTCTGTGTCCATGAAAGCTTCATCTCTTTCTCGTTTACTTCCCTCTTTCTCCTCTAATTCCCGTTATGGGTCGTCCCAGAAACCCTGCATCT TCAGCAGGCATTCGTCTCTGTCTCACAATCCGTCGCCTTTCCCCAAATCCCTCAACCTCATCCAATCTCCTTCTCGGGATGCGAAACCCCGTGCATCCCC ATCAGGCGTCGTTTTGTCTTCGTCTCCCACCTCCGAGCTGGTGTCAGGTAAGCTCCAGCAACTCATCTCTGAATTCGGATCACTTGACGAACCGGCCGAC AGGATCAAGCGGCTGATGGGTTACGCCGCTCTGCTCCCACCATTTCCCGAAGCGTCCCGGGTCGGGTCCAACCGCGTCATGGGTTGCACCGCCCGGGTTT GGTTGGATGCCGGGATGGACGAGAACGAGAAGATGAAGTTTTTGGCCGACAGTGATTCGGAGATCACGCGAGGGTTTTGCGGTTGCTTGATCTGGTTACT CGACGGGGCGGCGCCTGAGGAGGTGTTGAGTATCAAGACGGAGGATTTGGCGGCGCTGAATGTAGGGATGACCGGAGCTCAGAGGTCGAGAGTGAATACT TGGCATAACGTTCTGGTTAGTATGCAGAAGAGAACCAAGAAATTGGTGGCCGAAATTGAAGGCAAATTGTTTCAGCCTTTCCCGTCGTTGATGGTTACCT CTCACGGGATTGAAGCCCAAGGAAGCTATGCTGAAGCTCAGGCCAGATATTTGTTCCCGGATGAGTTGAAGGTTCAGCAACTTGTTAAGGTGCTAAAAGA GAAGCAAATCGGAGTAGTGGCACATTTTTACATGGACCCTGAAGTTCAAGGTGTCCTCACTGCCGCGCAGAAGCATTGGCCTCACATACATATCTCTGAT TCTCTGGTAATGGCGGATAGTGCTGTGAAGATGGCAGAAGATGGATGCAAATTCATAACAGTCCTTGGTGTCGATTTCATGTCCGAAAACGTCCGTGCTA TCCTTGATCAGGCTGGATACCGAAATGTTGCTGTATACAGAATGTCTGATGAGCAAATTAGCTGTTCGCTGGCAGATGCTGCATCCACCCCTGCATATAT GAATTATCTTGAGGAGGCTTCCAAGTCTCCTCCATCTCTGCATGTTATCTATATAAATACGTCGCTTGAGACCAAAGCTTATACTCACGAACTCGTGCCT ACGATTACATGCACTTCTTCCAATGTCGTTCAAACCGTATTGCAAGCCTTCGCTGAAATTCCAGATTTGAAGATATGGTATGGCCCTGACTCTTACATGG GTGCTAACATAGCAAAACTGTTCCAGCAAATGACAATGATGACTGATGAAGAAATCGCTGACATACACCCTGCACATACTGCAGACACCATTAGATCATT TCTTCCTCGCCTGCATTACTTTCAGGATGGATCATGCATTGTTCATGATCTTTTCGGACATGAAGTTGTACAGAAGATAAACGAAATGTACGGTGATGCT TTCTTGACTGCTCATCTTGAGGTTCCAGGAGAAATGTTTTCTTTAGCAATGGATGCAAAGAAGAGAGGAATGGGGGTAGTAGGATCAACACAAAACATAC TAGACTTCATAAAACAGAGAGTCCAAGAAGCTCTAGATAGAAATGTGAGTGATCATCTCCAATTCGTGTTGGGCACAGAGTCTGGAATGGTGACTGCTAT CGTTGCAGCAGTCCGGCAGTTACTAGACTCCTCGACATCTTCCGAGAAAGCAAATATTGTCATCGAAATTGTCTTCCCCGTATCATCAGACTCAATAACT CAAACGAGAACCAGTTCACCTTTGGATTCAAACTCGGTCACACTTGGAGATGTTGTATTACCTGTAGTACCTGGTGCTGCCAGTGGCGAGGGATGTTCTT TGCATGGGGGATGTGCATCCTGTCCGTATATGAAGATGAATTCTCTCAACTCTCTACTGAAAGTATGCCATCAATTGCCCGACACGGAGAATATGCTAGC CCCTTATCAAGCTGAACGCTTTAAGACACAGACACCAGGCGGGAAAGATATAGCAGATGTTGGTTGTGAACCCATCTTGCATATGAGACACTTCCAGGCT AAAAAGCAAATGTCGGATAAGCTCGTTCATCAGATCCTACATCAGCATGGCAATGGCAGATCGTGA
AA sequence Show only first row Show all	>Lus10043314 pacid=23168416 polypeptide=Lus10043314 locus=Lus10043314.g ID=Lus10043314.BGIv1.0 annot-version=v1.0 MEYSVSMKASSLSRLLPSFSSNSRYGSSQKPCIFSRHSSLSHNPSPFPKSLNLIQSPSRDAKPRASPSGVVLSSSPTSELVSGKLQQLISEFGSLDEPAD RIKRLMGYAALLPPFPEASRVGSNRVMGCTARVWLDAGMDENEKMKFLADSDSEITRGFCGCLIWLLDGAAPEEVLSIKTEDLAALNVGMTGAQRSRVNT WHNVLVSMQKRTKKLVAEIEGKLFQPFPSLMVTSHGIEAQGSYAEAQARYLFPDELKVQQLVKVLKEKQIGVVAHFYMDPEVQGVLTAAQKHWPHIHISD SLVMADSAVKMAEDGCKFITVLGVDFMSENVRAILDQAGYRNVAVYRMSDEQISCSLADAASTPAYMNYLEEASKSPPSLHVIYINTSLETKAYTHELVP TITCTSSNVVQTVLQAFAEIPDLKIWYGPDSYMGANIAKLFQQMTMMTDEEIADIHPAHTADTIRSFLPRLHYFQDGSCIVHDLFGHEVVQKINEMYGDA FLTAHLEVPGEMFSLAMDAKKRGMGVVGSTQNILDFIKQRVQEALDRNVSDHLQFVLGTESGMVTAIVAAVRQLLDSSTSSEKANIVIEIVFPVSSDSIT QTRTSSPLDSNSVTLGDVVLPVVPGAASGEGCSLHGGCASCPYMKMNSLNSLLKVCHQLPDTENMLAPYQAERFKTQTPGGKDIADVGCEPILHMRHFQA KKQMSDKLVHQILHQHGNGRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10043314 [exp]	0	1
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10027857 [exp]	2.0	0.9124
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10038977 [exp]	9.6	0.8667
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10017187 [exp]	12.4	0.8131
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	16.7	0.8109
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	16.8	0.8146
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10013806 [exp]	20.1	0.8629
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10028333 [exp]	23.2	0.8395
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10041824 [exp]	27.9	0.8126
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10000496 [exp]	32.2	0.8588
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10030056 [exp]	32.6	0.8040

Compare expression of checked genes

Lus10043314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.