Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24730 373 / 2e-130 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019465 [exp] 493 / 2e-177 AT4G24730 443 / 6e-158 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089400 [exp] 414 / 4e-146 AT4G24730 440 / 2e-156 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4) Potri.015G085232 [exp] 196 / 4e-63 AT4G24730 177 / 4e-56 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10043315 pacid=23167984 polypeptide=Lus10043315 locus=Lus10043315.g ID=Lus10043315.BGIv1.0 annot-version=v1.0 ATGAAGCGGCAGCAACGGGAGGATACTGTATGGAAGTGGTGGTCGTGGTGGAGGGAAAAGATAACCGGTTGGAGGCCTTCGCTGGCTAGTATATCTCTCC CGATGACGATGGCGTCAAAACCTTTGTTTTCATTTGGGGTTATAGCTGATGTGCAGTATGCTGATCTCCCTGATGGCTTTTCATTCCTTGGCGTCCCTCG CTACTATCGGCACAGCATCAATGTGCTTCAAAGAGCGGTAGAGAAATGGAACCAGCGCCAAAACCTAATGTTTGTGATGAATTTTGGTGATATTGTTGAT GGGACCTGCCCCAAAGACCAGTCACTAGATTCTGTCAAGAAAGTAGTTTCTCATTTTCAGAAATTCAACGGTCCTGTTTATCACATGATTGGCAATCACT GCCTATACAATCTTCCCCGTGAAGAATTGCTTCCGTTACTCACTATTCGGAGCTCCGATTTACGTGCGTACTACGACTTCTCACCCGTTCCGGAGTTTAG ATTCGTGGTGCTGGATGGTTATGATATCAGCGCTATTGGCTGGTCTGAAGATAATCCAAAGACAGTGCAAGCGTTAGAACTTCTGAAGACGAAGAATCCG AATTCAGATAAGAACAGCCCCGAAGGACTGGTGGGTGTCGAGAGAAGGTTCCTCAAGTACAATGGAGCTGTTGGGAGAGAGCAATTGGATTGGTTAGACG ATGTTCTCCAGGATGCAACGGAACTAAAGCAGAAAGTTTGCCTTTCTGGACATGATGACAACGGTGGATACTCGATAGACTCCCATGGGATTCACCATAG GTCCCTTGAGGCTGCTCTGGAATGTCCTCCTGGTACTGATGCATTTGGTGTTGTTGATGTTTATGATAACAGGTTTGTTCTCTCTGGTACTGATAGAATG CCAAGCACAGAAATGGTATTTGACACCTAA
AA sequence Show only first row Show all	>Lus10043315 pacid=23167984 polypeptide=Lus10043315 locus=Lus10043315.g ID=Lus10043315.BGIv1.0 annot-version=v1.0 MKRQQREDTVWKWWSWWREKITGWRPSLASISLPMTMASKPLFSFGVIADVQYADLPDGFSFLGVPRYYRHSINVLQRAVEKWNQRQNLMFVMNFGDIVD GTCPKDQSLDSVKKVVSHFQKFNGPVYHMIGNHCLYNLPREELLPLLTIRSSDLRAYYDFSPVPEFRFVVLDGYDISAIGWSEDNPKTVQALELLKTKNP NSDKNSPEGLVGVERRFLKYNGAVGREQLDWLDDVLQDATELKQKVCLSGHDDNGGYSIDSHGIHHRSLEAALECPPGTDAFGVVDVYDNRFVLSGTDRM PSTEMVFDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24730			Calcineurin-like metallo-phosp...		Lus10043315 [exp]	0	1
AT5G20550			2-oxoglutarate (2OG) and Fe(II...		Lus10016145 [exp]	15.7	0.6658
AT1G64870			unknown protein		Lus10041678 [exp]	56.9	0.6248
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10043203 [exp]	75.6	0.5889
AT3G14880			unknown protein		Lus10013746 [exp]	77.0	0.5750
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10015522 [exp]	88.1	0.5982
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10023601 [exp]	104.9	0.5810
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016891 [exp]	124.2	0.5709
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10013116 [exp]	148.4	0.5375
AT1G50660			unknown protein		Lus10002072 [exp]	204.1	0.5274
AT1G07476			unknown protein		Lus10016504 [exp]	267.6	0.4996

Compare expression of checked genes

Lus10043315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.