Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019466 [exp] 1011 / 0 ND / Lus10017959 [exp] 197 / 2e-58 ND / Lus10041949 [exp] 192 / 7e-56 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G084300 [exp] 465 / 4e-157 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043316 pacid=23168352 polypeptide=Lus10043316 locus=Lus10043316.g ID=Lus10043316.BGIv1.0 annot-version=v1.0 ATGGATCGGGCGAGATTCACCCGAGGATCGGCGGCTGCGACAGGACCATCGATGACCGCTGTCCTCCACAACAAGAAGAAATCGGCAGCCGGCCGTGCTT CACCGGACCTGACAGATTTCATGAACGACATGTTCTTCGGAACCATCAGTTCTGATAACAATAAGTCTTATAACCTGACAGGGAATAGTAATAGTAATAA GAATAGTAGGTGGGAAGATGAGGAACAAGGCGGTTTCGATGACAGCATGAGGAGCGACAGCAGCAAGCTGACACAAGAGTGGCTCCACGAGGCTAGGAGG ATGGTTGCTTCTTCTCCTTCCCGCGGTGGTTTCGATTCCCCTGCTGCTGCTGCGCCGGTGAAGCTTGTTGGGTCTCCCAGGTTCGCCTCCGCCAGGCTTT CCACTGGTTCTGCACTTGATCGTAGGGATCCTCTTTCCAGATCCGCCAGAAGGAACAGGGCAACGGAAGGGTTCAGTGAAGAGATCCTGACGCGATCGGC GAGGCACACTCGCAACGGCTCCATCTCGTCGGACCAATCAGCAGAAACATCCCCGGCATCACAAGTCCACAAGTGGATTTCCAAAAACATCAAACCCCCA AATGGCTCATCACCTGAATACCATTTCTCCAACAACAACAACAACGCTGCTCTCGTCTACCCATCTAACGAATCATCAGGGCTTCCACCTCCGCCGCGGC AATCCACACATCACCGGAGGTCCCGCTTTCAAGCCGAATCTCCGACGTCTCATCCTCAATCTTCTCCTTCGCCGGCTCAGGATATTCCCAGAAGGTTCAA GCACCAACACGGCCATGCTGCTGGTCCTCCACCTCCACCGCCGCGTTCCGGTCAGGTGCTCTCGCCGCCCAAGAATCTCGTTGAGTCGGCTCACAGGAGG TCCATCTCTAAGTCCACTTGTTCCATTGAGAAAATAGCTCCCAATCAGGTTGCACACGGAGATGAAGCTTTAGGAGAAGAACAAGTTAGTCTGAATGGGT TCCTGAAGAAACAGAGGGTTAAAGCTGAACAGATCATGAACAAAGAGATCGATGGCAAGGCTAAGATCATCCTCTCTGGCCCGTCTAACAGTACAAGTTC AATGGTGGCAGCAATTTGCTATGCTTGTTTGTTGGAGAACAGGGTATTGAAGAATAACAAGGAAGATGCCGATACTCCATACGTAGTGGTGCCAGTGTCA GGACAACTGAACATCCTTGTGGTTGGCCAAGACGTACTCCGAACTAATGGCGAGGTCGGATCTCAATGTACAATTCTGACAGACAACTACTGTGAAGATG CTTATGACTTGCTAGAATTCCAGATGCTGAAAAAGCTTTTGCTTGCAGGGATCTTGTTAGACACGCAGAATCTAAATTCAGCAGTTGAGTTGTCGACAAC AAGAGACTCTGAGGCAGTCCAGTTGCTCCTAGCTGGCTCTCCTCCAAACTACCGGACTACTATCTATGACCAATTGGTGCAAGATCAGAAAGACCACGCC TTTTTTGAAGCATTACGCCGTTACTATGGAAAGCCTCCCAGCAGCGAGAGTGGCAGAACGGAGAAAAATTCGAGCAACTCGAGCCAAACTGAATCCAATA CGACAACCAAAGGGGATCCTTCAAGAACAGCTAAACAAAATAGTAGTGGAGGTTCGCGGAAGGCAGCAGCATCAACAGCAGCAGGAACGATTGTGAAAGC ACAGGCTCAGCAGCCTAATAACAGCGATTCCTCTCGCGGAAAGAACAAGAACTTCCTCTCCAAGTGGTTTGGTTTCGGAGGAAAGTAA
AA sequence Show only first row Show all	>Lus10043316 pacid=23168352 polypeptide=Lus10043316 locus=Lus10043316.g ID=Lus10043316.BGIv1.0 annot-version=v1.0 MDRARFTRGSAAATGPSMTAVLHNKKKSAAGRASPDLTDFMNDMFFGTISSDNNKSYNLTGNSNSNKNSRWEDEEQGGFDDSMRSDSSKLTQEWLHEARR MVASSPSRGGFDSPAAAAPVKLVGSPRFASARLSTGSALDRRDPLSRSARRNRATEGFSEEILTRSARHTRNGSISSDQSAETSPASQVHKWISKNIKPP NGSSPEYHFSNNNNNAALVYPSNESSGLPPPPRQSTHHRRSRFQAESPTSHPQSSPSPAQDIPRRFKHQHGHAAGPPPPPPRSGQVLSPPKNLVESAHRR SISKSTCSIEKIAPNQVAHGDEALGEEQVSLNGFLKKQRVKAEQIMNKEIDGKAKIILSGPSNSTSSMVAAICYACLLENRVLKNNKEDADTPYVVVPVS GQLNILVVGQDVLRTNGEVGSQCTILTDNYCEDAYDLLEFQMLKKLLLAGILLDTQNLNSAVELSTTRDSEAVQLLLAGSPPNYRTTIYDQLVQDQKDHA FFEALRRYYGKPPSSESGRTEKNSSNSSQTESNTTTKGDPSRTAKQNSSGGSRKAAASTAAGTIVKAQAQQPNNSDSSRGKNKNFLSKWFGFGGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10043316 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10024120 [exp]	1.0	0.9953
AT1G06135			unknown protein		Lus10000703 [exp]	1.7	0.9945
AT1G11925			Stigma-specific Stig1 family p...		Lus10020831 [exp]	2.8	0.9913
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10002357 [exp]	3.2	0.9950
AT1G17860			Kunitz family trypsin and prot...		Lus10026357 [exp]	4.5	0.9928
AT1G17860			Kunitz family trypsin and prot...		Lus10039163 [exp]	5.3	0.9913
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10027752 [exp]	5.7	0.9831
					Lus10032178 [exp]	6.3	0.9934
AT1G21326			VQ motif-containing protein (....		Lus10012286 [exp]	6.6	0.9903
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10030931 [exp]	7.1	0.9907

Compare expression of checked genes

Lus10043316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.