Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04220 213 / 2e-67 Plant protein of unknown function (DUF868) (.1) AT4G12690 209 / 3e-66 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT5G28150 194 / 2e-60 Plant protein of unknown function (DUF868) (.1) AT3G04860 187 / 1e-57 Plant protein of unknown function (DUF868) (.1) AT5G48270 185 / 3e-56 Plant protein of unknown function (DUF868) (.1) AT3G13229 164 / 2e-48 Plant protein of unknown function (DUF868) (.1) AT2G27770 127 / 3e-34 Plant protein of unknown function (DUF868) (.1) AT5G11000 118 / 2e-30 Plant protein of unknown function (DUF868) (.1) AT2G25200 86 / 1e-18 Plant protein of unknown function (DUF868) (.1) AT2G36470 77 / 1e-15 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019467 [exp] 511 / 0 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10006223 [exp] 254 / 4e-84 AT4G12690 213 / 2e-68 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Lus10036872 [exp] 224 / 3e-72 AT4G12690 202 / 2e-64 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Lus10001787 [exp] 195 / 2e-60 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 189 / 8e-58 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 187 / 3e-57 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10013755 [exp] 184 / 6e-56 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10027127 [exp] 162 / 1e-47 AT2G04220 263 / 4e-87 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 162 / 5e-47 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G084500 [exp] 325 / 6e-111 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.012G089100 [exp] 313 / 3e-106 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.010G047700 [exp] 286 / 4e-96 AT5G48270 223 / 3e-71 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 203 / 9e-64 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.005G068100 [exp] 200 / 3e-62 AT2G04220 385 / 4e-135 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 199 / 5e-62 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.007G101000 [exp] 191 / 1e-58 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 184 / 3e-56 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 182 / 1e-55 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.001G467500 [exp] 169 / 3e-50 AT2G04220 270 / 5e-90 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10043317 pacid=23168439 polypeptide=Lus10043317 locus=Lus10043317.g ID=Lus10043317.BGIv1.0 annot-version=v1.0 ATGCAACACCTTGACAAGAGCCTCCCGGCGGCTTCCTCCGCCGCCGTCACCAGGTCCGGCCAGAGCATATTCTCGTCGGTATACCGGACAAAGATATCCG GCCAGTGCCGCCTAGTGACCGTGACATGGTCCAAAAACCTCCTCCTCCACGGCCTATCCATCTCTGTTCAAGACCACCAGGCCCCACAGCACCAAGTCAG CCTGGAGCTCAAACCCTGGTACTTCTGGCGCAAGCATGGCTCCAAGCGCTTCTTCCTCCTCCTTGAAGACGACGACGACGACACTCACAACAAGGCGCCG TTAGACGTCTTCTGGGACCTTAAATCCGCCAAGTTCCACGTCGACACGCCCGAGCCCTCGTCACATTACTACGTCGCTCTAGCGTGCGAGGGCGAGGTTG TCCTCCTCCTGGGAGACATGCGCAACGAGGCCTACCGCAAATCCCGCTGCCGTCCTTCTTTAATCGACCCGGTTCTCCTCTCCAGGAAGGAACACGTGTA CGCGGGGAAGAAGGTGCTCCTCACGCGCGCCAAGTTCCACGACCGCGGCAAGGTCCACGACATCTCTATAGAGTGTAAGAACAAGGCCGAGCCGGAGATG GAGATTCGCATCGACGGAAAACTGGCGGTGGAGGTCAAGCATTTGAGGTGGAAGTTTAGGGGTAACGACTCTGTTCAGCTCACTAAATATCTTGAGGTGG AAGTTTACTGGGACGTTCATGATTGGTTGTTTAGTCCTGGATTGCGGCATGCCTCGTTTATATTTAAACCCATTGTTACCATGATTTCGTCGTCCACGTC GTCGGATTCTTCGCCGACGACTACGACGACCACACCTTTGTCGTCCGGGGTTAGTAGTTCAGGGTCATTGTCGGCGGCGGATGGGACGATGAGTCAGAGT GTTATTGGGGAGACGGAGTTTAGCCTTTTTCTGTATGCTTGGAGGATGGATTAA
AA sequence Show only first row Show all	>Lus10043317 pacid=23168439 polypeptide=Lus10043317 locus=Lus10043317.g ID=Lus10043317.BGIv1.0 annot-version=v1.0 MQHLDKSLPAASSAAVTRSGQSIFSSVYRTKISGQCRLVTVTWSKNLLLHGLSISVQDHQAPQHQVSLELKPWYFWRKHGSKRFFLLLEDDDDDTHNKAP LDVFWDLKSAKFHVDTPEPSSHYYVALACEGEVVLLLGDMRNEAYRKSRCRPSLIDPVLLSRKEHVYAGKKVLLTRAKFHDRGKVHDISIECKNKAEPEM EIRIDGKLAVEVKHLRWKFRGNDSVQLTKYLEVEVYWDVHDWLFSPGLRHASFIFKPIVTMISSSTSSDSSPTTTTTTPLSSGVSSSGSLSAADGTMSQS VIGETEFSLFLYAWRMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04220			Plant protein of unknown funct...		Lus10043317 [exp]	0	1
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10032355 [exp]	10.2	0.9950
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	10.3	0.9977
AT3G03200	NAC	ANAC045	NAC domain containing protein ...		Lus10033650 [exp]	12.8	0.9706
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10030842 [exp]	14.1	0.9974
AT4G34810			SAUR-like auxin-responsive pro...		Lus10012184 [exp]	16.2	0.9889
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10023602 [exp]	18.1	0.9974
AT4G34810			SAUR-like auxin-responsive pro...		Lus10007561 [exp]	19.7	0.9899
					Lus10042799 [exp]	20.3	0.9867
					Lus10026755 [exp]	20.9	0.9974
					Lus10001326 [exp]	23.3	0.9974

Compare expression of checked genes

Lus10043317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.