Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50175 46 / 2e-07 unknown protein AT4G03600 40 / 6e-05 unknown protein AT1G03730 37 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019469 [exp] 89 / 4e-24 AT5G50175 51 / 3e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083900 [exp] 49 / 3e-08 AT5G50175 / unknown protein Potri.013G130300 [exp] 40 / 7e-05 AT1G03730 179 / 3e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043318 pacid=23168189 polypeptide=Lus10043318 locus=Lus10043318.g ID=Lus10043318.BGIv1.0 annot-version=v1.0 ATGACGCCGCCGGCTTCTCTCGGACCCAAATCCGGCGCCACAGCGATTCTGCTGCTCTTCTCTCTTTCACTACTTGCTCTACCCGCTCTGATCACTGTCG GTACCGCGGCCTACTGGCCCGATTTACATCGCTCCTTCCTCTTCCTTGCTGCTGCTTTCGTTTTGGCTTCGCTGTTCGTCGTCGTTGCCGCAAGAGCTGC CATGGTCACTTGGATTACCCTGCTGGTGCTGTTAACCTTCGCCGGCAACCGCCGCCGTGTTCTCGTTCAGCACCGCCAGCGGATAACCACTGACGTCCTC CGCAATCTGTTTAAATACGCCGCCTAG
AA sequence Show only first row Show all	>Lus10043318 pacid=23168189 polypeptide=Lus10043318 locus=Lus10043318.g ID=Lus10043318.BGIv1.0 annot-version=v1.0 MTPPASLGPKSGATAILLLFSLSLLALPALITVGTAAYWPDLHRSFLFLAAAFVLASLFVVVAARAAMVTWITLLVLLTFAGNRRRVLVQHRQRITTDVL RNLFKYAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50175			unknown protein		Lus10043318 [exp]	0	1
AT5G50175			unknown protein		Lus10019469 [exp]	1.0	0.9487
AT2G47485			unknown protein		Lus10028487 [exp]	1.4	0.9031
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	1.7	0.8965
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029438 [exp]	2.8	0.8870
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Lus10027811 [exp]	4.8	0.8172
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Lus10022590 [exp]	5.5	0.8685
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	6.0	0.8526
AT4G35160			O-methyltransferase family pro...		Lus10001510 [exp]	6.9	0.8382
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	8.9	0.8289
AT2G39650			Protein of unknown function (D...		Lus10002695 [exp]	10.9	0.8594

Compare expression of checked genes

Lus10043318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.