Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52450 70 / 1e-15 MATE efflux family protein (.1) AT2G34360 64 / 2e-13 MATE efflux family protein (.1) AT1G73700 54 / 5e-10 MATE efflux family protein (.1) AT2G04070 49 / 2e-08 MATE efflux family protein (.1) AT2G04040 47 / 1e-07 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04100 47 / 2e-07 MATE efflux family protein (.1) AT3G21690 46 / 2e-07 MATE efflux family protein (.1) AT5G17700 46 / 3e-07 MATE efflux family protein (.1) AT4G00350 45 / 6e-07 MATE efflux family protein (.1) AT2G04050 44 / 1e-06 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019470 [exp] 127 / 2e-36 AT5G52450 378 / 5e-127 MATE efflux family protein (.1) Lus10017949 [exp] 86 / 3e-21 AT5G52450 402 / 2e-136 MATE efflux family protein (.1) Lus10019492 [exp] 72 / 3e-16 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10041994 [exp] 60 / 5e-12 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 59 / 1e-11 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10017998 [exp] 58 / 2e-11 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10006979 [exp] 56 / 1e-10 AT1G13120 479 / 1e-157 embryo defective 1745 (.1) Lus10029668 [exp] 50 / 1e-08 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10038850 [exp] 45 / 8e-07 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G171240 [exp] 64 / 1e-13 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.006G170900 [exp] 64 / 1e-13 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.012G051900 [exp] 62 / 7e-13 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.010G116700 [exp] 57 / 5e-11 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.015G139500 [exp] 49 / 4e-08 AT3G03620 521 / 0.0 MATE efflux family protein (.1) Potri.015G139400 [exp] 49 / 4e-08 AT3G03620 548 / 0.0 MATE efflux family protein (.1) Potri.002G161200 [exp] 47 / 8e-08 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 47 / 1e-07 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 46 / 3e-07 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G117400 [exp] 45 / 6e-07 AT3G23550 540 / 0.0 MATE efflux family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043319 pacid=23168259 polypeptide=Lus10043319 locus=Lus10043319.g ID=Lus10043319.BGIv1.0 annot-version=v1.0 ATGGGGAATAGCGGTGCCTGCCTGGCCAACGACGTTACTTATTGGACGATTGCTGTCATCCTGATGGCGTACATCAAGTTTTCAGGTTCCTGTAAGGATA CCTGGAAAGGTTTCAACTTGGATTGCGCCAGAGATGTGCTCTCTTTCCTCAAGTTGGGTGTCCCTTCCGGCCTCATGACTAGGAGCCGGCAAACCAAAGG CCACTCTACTCTTGGTAATGACATTATCAACTAA
AA sequence Show only first row Show all	>Lus10043319 pacid=23168259 polypeptide=Lus10043319 locus=Lus10043319.g ID=Lus10043319.BGIv1.0 annot-version=v1.0 MGNSGACLANDVTYWTIAVILMAYIKFSGSCKDTWKGFNLDCARDVLSFLKLGVPSGLMTRSRQTKGHSTLGNDIIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52450			MATE efflux family protein (.1...		Lus10043319 [exp]	0	1

Compare expression of checked genes

Lus10043319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.