Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24690 290 / 1e-86 AtNBR1 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) AT1G73700 108 / 2e-24 MATE efflux family protein (.1) AT5G52450 107 / 3e-24 MATE efflux family protein (.1) AT2G34360 107 / 4e-24 MATE efflux family protein (.1) AT1G15170 95 / 3e-20 MATE efflux family protein (.1) AT1G66760 95 / 3e-20 MATE efflux family protein (.1.2) AT1G71140 95 / 4e-20 MATE efflux family protein (.1) AT5G44050 93 / 2e-19 MATE efflux family protein (.1) AT5G65380 92 / 3e-19 MATE efflux family protein (.1) AT3G23550 92 / 4e-19 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019471 [exp] 708 / 0 AT4G24690 173 / 3e-47 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Lus10017950 [exp] 446 / 8e-145 AT4G24690 536 / 0.0 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Lus10019470 [exp] 232 / 2e-67 AT5G52450 378 / 5e-127 MATE efflux family protein (.1) Lus10017949 [exp] 169 / 1e-44 AT5G52450 402 / 2e-136 MATE efflux family protein (.1) Lus10019492 [exp] 123 / 2e-29 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10042705 [exp] 105 / 8e-26 AT1G73700 209 / 7e-66 MATE efflux family protein (.1) Lus10017998 [exp] 110 / 5e-25 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10041994 [exp] 109 / 9e-25 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 103 / 1e-22 AT5G52450 507 / 1e-177 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G084000 [exp] 443 / 8e-144 AT4G24690 490 / 5e-164 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Potri.012G085700 [exp] 435 / 1e-140 AT4G24690 497 / 2e-166 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Potri.012G085450 [exp] 258 / 4e-78 AT4G24690 279 / 2e-87 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Potri.010G116700 [exp] 124 / 7e-30 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 120 / 2e-28 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.006G171240 [exp] 112 / 7e-26 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.006G170900 [exp] 112 / 8e-26 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.011G117300 [exp] 102 / 2e-22 AT3G23560 547 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.011G117100 [exp] 101 / 2e-22 AT3G23560 545 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.010G116900 [exp] 100 / 6e-22 AT1G15170 598 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF00569 [flax] [poplar] ZZ Zinc finger, ZZ type CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10043320 pacid=23168272 polypeptide=Lus10043320 locus=Lus10043320.g ID=Lus10043320.BGIv1.0 annot-version=v1.0 ATGGTTGCAGTTATCCCATTAAGCAAAACCAAAAGTGCTATTAATAGTCAGTCGGTGGGTGTGGATTACGGAGGAAGGAAGGACTCCTCGTCGTCACGCG AAAAGCGGCTTACAGCTCCATCTGCCGGTTTACAATCTCTTCTCACATCACTTCTCACTCATCTCTTACATATTCTCCAGGCTTTTCCCATTCTGATGTC AGTTTTCCCTGTGCTCTCATCACTTACTATGGCGTCTACTCTGGTGATCAAGGTTAGCTATGGTGATACGTTGAGGCGATTCAATGTTGCTGTTAGGGAT GACGGACAATTGTCCCTCGACATGGAGGCGCTCAGGGCTACGATCCTTGGTCTTTTCAACATCCCTTCCGAGTCAGAAATTAGACTGACTTATGTTGATG AGGATGGGGATGTTGTGACTCTTGTTGATGATTATGATCTGCAAGAGGTCATGAGGCAAAATCTCAAGTTCTTGAAGGTTTCTGTCATTTTGCAACATGC AAAAGCTGGATTGTCTAATTCTGTTCCACCTAGTGCTTCTTCTCCCTTCAGATCTCCACCAATCAATGGGACATTATCTAATGCCACATCTGAAGCTGTT TCTACTGGTCCTCCGATCAAAACTGGCGTTGCTAACCTTTTGAAATCCGCTCCTCTTCGTGAAGCACTTTCCAAGCTGTCCATGGAGCTGGCTTCAAAAA ATGGATCTTCCTCTCTGGTCATTACGGACCAGAAGCCTTTCGTTGCCACTAATGTGATCACTCAAGCAGGGGTTGGCAGTGTCCCAACTGCACCATGTTT GGTTCCATGCGTGCCAGAAGATGGTGCTGTTAAATGCAATGGACCTTCTGATACTATCCAGGATGAGCGTGGGCCAAGTCTACCGAATCCTATTTCTCAT CCTATTGATTTGACTAAGGATTATGAGAATGATTCTTCTCCATTTAGGAGAATGTTTGGGGATTCTTTACGGCCCCTAATTAACAAGAGGGCAATTGGTG AAGCCGATAAGCAATCAAAGGAACAAAGTGCTGCAATTCCTGTTTTGACTGATACAATGCAGCGTTGGGGCACTTCATGTCTGAGGAGTAATAAGTTGCC TAATGCTAGCAGTACTCACGTTCTGGTGCCTCTGGATCTTACTGATGCTAAGAGTTCTAACTCACAGAATGATGGATTGATTGGCTTGTTTCACCAAAAT ATTATATGTGATGGGTGCGGGATAGTTCCCATTCCAGGACCTAGATACAAGTCAAAAATAGAGGAAGATCATGACTTGTGCAGCTTATGCTTTGCTGACA TTGTTAATAAAGATGACTACATCAAGATGAACGCACCCATGTCTGCTCAACATTCACAGTCTTCCAGGAGCTTGCGTGATCCTGTTCAAAGTAATGGACT GTTTTCACCTGGGAGGTCAGCTCTTCTTAAGTTGGATAGCTGCTTTGTTTTAGATGTGAATGTAGAGGATGGTACCATAATGGCACCATCCACTACATTT ACGAAGATATGGCGGATGCGAAACACTGGTGTTGTTGCGTGGCCTTGTGGAACTCGCCTAGTGCAAATTGGAGGTGACAAATTTAGCACTAAAGATACAG CTGATCTGGAGATTCCTGCGCATGGTGTTCCTGTGGATGCAGAACTTGACGTTGCCATGGACTTTACTTCACCTGCATCTCCTGGCCAGTATATTTCATC CTGGAGAATGGCTTCACCATATGGCACACCATTTGGTCAAGGCATTTGGGTTCACATCCAGGTGGATGCTTCTCCGAGCAGTGGAAGATCGCATGGCTTC AACTTGAATTTGCTCCCTGAATGCGGTGATGAGCCGAAATGTCTTGGAACAGTAGATGTGAAGAACAAACCTGTTGCTGGCGGGGTTTTCCCGGAGACTT ATGGTTCCGCAATATCTTCAGAGCATTTTAACCTGTCTCATCCTGCTGCTCCTTCTGGTGTCTGCACAAGTAGTGATCTCCCAACAGTAAAACCAACCAA ACCAGACAAAAAGGGCAAGGGAGTACATGATTCTGCTATCGAGAAGATGCTTCTGGAGGATCTGGAAGAGATGGGGTTCAAGCAGACAAATCTGAACAAG GAAATCCTGAGGATGAATCAGTATGACTTGGAGCAGTCACTGAACGATCTCTGTGGGGTTGCCGAGTTTGATGATTCTATCCTCCTAGAGTTGGATGAGA TGATAGGAATGGGGGCAGCCTTGGAGACGCTGTGCGGACGAGCTTACGGAGCGAAACAATACCACATGCTAGGAGTTCACATGCAGAGGACAATGCTAGT CTTCGCAATCCTCTGCATCCCAGTTTCCGTACTGTTATCGTTTACACGCCCGGTTCTCCGATTCCTGAAGCAGGAAAGTTCCATCTCGAACTTAGCAGGG GAATCAGCTCCTTGGCTGATTCCAAGCCTTTTGCCATTCGGCATTCTTCAGTGCCAGACCAGATTCCTGCAGACTCAGAACATCACGTCACCACAGATGA TAAGCGCCACGGTCGGGTTCATAGTCCACGGTGTATCCTGCTGA
AA sequence Show only first row Show all	>Lus10043320 pacid=23168272 polypeptide=Lus10043320 locus=Lus10043320.g ID=Lus10043320.BGIv1.0 annot-version=v1.0 MVAVIPLSKTKSAINSQSVGVDYGGRKDSSSSREKRLTAPSAGLQSLLTSLLTHLLHILQAFPILMSVFPVLSSLTMASTLVIKVSYGDTLRRFNVAVRD DGQLSLDMEALRATILGLFNIPSESEIRLTYVDEDGDVVTLVDDYDLQEVMRQNLKFLKVSVILQHAKAGLSNSVPPSASSPFRSPPINGTLSNATSEAV STGPPIKTGVANLLKSAPLREALSKLSMELASKNGSSSLVITDQKPFVATNVITQAGVGSVPTAPCLVPCVPEDGAVKCNGPSDTIQDERGPSLPNPISH PIDLTKDYENDSSPFRRMFGDSLRPLINKRAIGEADKQSKEQSAAIPVLTDTMQRWGTSCLRSNKLPNASSTHVLVPLDLTDAKSSNSQNDGLIGLFHQN IICDGCGIVPIPGPRYKSKIEEDHDLCSLCFADIVNKDDYIKMNAPMSAQHSQSSRSLRDPVQSNGLFSPGRSALLKLDSCFVLDVNVEDGTIMAPSTTF TKIWRMRNTGVVAWPCGTRLVQIGGDKFSTKDTADLEIPAHGVPVDAELDVAMDFTSPASPGQYISSWRMASPYGTPFGQGIWVHIQVDASPSSGRSHGF NLNLLPECGDEPKCLGTVDVKNKPVAGGVFPETYGSAISSEHFNLSHPAAPSGVCTSSDLPTVKPTKPDKKGKGVHDSAIEKMLLEDLEEMGFKQTNLNK EILRMNQYDLEQSLNDLCGVAEFDDSILLELDEMIGMGAALETLCGRAYGAKQYHMLGVHMQRTMLVFAILCIPVSVLLSFTRPVLRFLKQESSISNLAG ESAPWLIPSLLPFGILQCQTRFLQTQNITSPQMISATVGFIVHGVSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10043320 [exp]	0	1
AT1G27180			disease resistance protein (TI...		Lus10040576 [exp]	8.7	0.6988
AT5G42905			Polynucleotidyl transferase, r...		Lus10005922 [exp]	10.0	0.6913
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10020851 [exp]	11.0	0.6647
					Lus10011588 [exp]	14.7	0.6844
AT5G04480			UDP-Glycosyltransferase superf...		Lus10017452 [exp]	17.8	0.6904
AT1G02660			alpha/beta-Hydrolases superfam...		Lus10010031 [exp]	22.2	0.6882
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023281 [exp]	29.6	0.6705
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10032256 [exp]	30.0	0.5958
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10000338 [exp]	31.9	0.6660
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10039883 [exp]	42.0	0.6491

Compare expression of checked genes

Lus10043320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.