Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48250 634 / 0 BIR6 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02490 305 / 3e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15980 301 / 1e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 127 / 3e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 125 / 1e-30 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G62470 125 / 4e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 125 / 4e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 124 / 6e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 123 / 3e-29 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT5G65560 121 / 2e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019474 [exp] 1112 / 0 AT3G48250 660 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032092 [exp] 288 / 5e-89 AT3G02490 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 126 / 6e-31 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 126 / 7e-31 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 123 / 3e-29 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021250 [exp] 123 / 4e-29 AT5G06400 988 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 119 / 4e-28 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033522 [exp] 119 / 6e-28 AT1G79540 663 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019160 [exp] 117 / 7e-28 AT5G47360 407 / 8e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G084800 [exp] 737 / 0 AT3G48250 715 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G108100 [exp] 340 / 1e-108 AT3G02490 604 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G108000 [exp] 333 / 5e-106 AT3G02490 623 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 138 / 7e-35 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050240 [exp] 130 / 9e-32 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 126 / 2e-30 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 124 / 5e-30 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G176100 [exp] 124 / 1e-29 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 122 / 5e-29 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G200800 [exp] 121 / 2e-28 AT5G06400 1132 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10043322 pacid=23168401 polypeptide=Lus10043322 locus=Lus10043322.g ID=Lus10043322.BGIv1.0 annot-version=v1.0 ATGCTTGACCTACTTTTAGAGAATGATTGGTCTGCCGAGTTGCATAACCAGTTAGAAGAGAGCTTTCATTCACCGATTACCCACGAGACAATTGTTTATG TACTGAGAAAACTGGACCAAGTGCCAGACAACGCTTGGGGTTTTTACAACTGGGTCAGGAAGAGAGATGGATATCTACCAAGTTCCTCCCTTTATAGCCT GTTGCTTAGGCTGTTTGCTAAGAAGGATTCCATGAAGAAGTTCTGGATCACTCTGAGGAAAATGAGAGAGGAAGGGTTTTGTTTGGATGAGGAGACTTAC CTAACACTTTCCAAGGTCTTTAAGAAGGAGAGGATGAACAGTGACGCTGTAGCCTTGAAACAATTTTATGAGAAGATGATTCAGGAGAATGCCATTGATG GTGTAGTGAAGAAGGTGGTTGGTGTAATTCTGGAAGAAGAAGAACAATGCTTTGATAAGGTTGAGAGGCGGTTGATGGATATGAAGATTATTTTGTCTGA TAACTTTGTGATACGATCATTGAAGGAGCTTAAGAGTCAGCCTTTCAAAGCTTTGAGGTTCTTCCATTGGGTTGCGAAGTCGTGCGAGGGATATAAGCAC ACCACTGTTACTTACAATGGTATGGCTAGGGTTCTTGGTCGGGGGGATACGATAGGGGAATTCTGGAGCATCGTTGAGGAGATGAAGAATGCTGGCTTCG AGATCGATATCGATACGTACATAAAGATCTCGAGGCACTTTCAGAAGTACAAGTTGACGGAGGAGGCGGTAAAGCTATATGAATTTATGATGGACGGTCC ATTTAAGCCCTCTGTCCAAGATTGCAGCTTGCTTCTAAGAAACATGTCTTCCAGTCATAAGCTGGATCTGACTTTAGTTTTTAGAGTCGTGCAGAAGTAC GAGAAGTCCGGGAATGTTCTGTCGAAAGCTGTTTATGACGGGATGCACAGGTCTTTTGTTAATGTGGGGAGCTTCGACGAAGCGGAAAAGATTGTGAAAG CTATGAAAGATGCAGGATACGAACCGGATAATATCACGTATAGCCAGTTGGTTTTCGGATTATGTAAAGCCGGTAGACTAGATGAAGCCTGCAAGATTTT GGATGATATGGAAATAGAAGGATGCACACCGGATATCAAGACTTGGACCATATTGATTCAGGGCCACTGTGATGCCGGGGAACTGGGGAAGGCGTTTGTG TGCTTTGATACAATGATGAGGAAAAATGGCGGCCCTGATGCTGATTTGGTGGATGTGTTGATGAAGGGCTTTGTAGGCCAAAAGAGGGTAGATGGAGCGT ACGTATTTCTAGTTGAGATGATCAATAAGGCTCATGTGACACCTTGGCAAGCTACTTATAAGCTTCTTATCGACAGCCTTTTAGGCGAGAGCAAACTCGA AGAGTCGATGAGTCTCCTCCGGTTGATGAAGAAGCATAACTATCCTCCACACGCTGAGCCTTTTGTTCAATACATCTCCAAATTTGGGACCGTGCAAGAT GCTGCGGATCTCCTGCAGGCGTTGAGTAACAAACAGTATCCTTCGTTGACGGCTTATCGGAATGTGTTTGAATCCTTCTTCAAGGAAGGTAGACATTCTG AGGCGCAGGATCTGCTTTATAAATGTCCTTATCATGTTCGTGAGCATCAACAGATTGGTCAGCTGTTTGGCTCCGCAAAGAGAGGTGCAGCTGCTGCAAC CGTATCTAAGAACACTGTCACATAG
AA sequence Show only first row Show all	>Lus10043322 pacid=23168401 polypeptide=Lus10043322 locus=Lus10043322.g ID=Lus10043322.BGIv1.0 annot-version=v1.0 MLDLLLENDWSAELHNQLEESFHSPITHETIVYVLRKLDQVPDNAWGFYNWVRKRDGYLPSSSLYSLLLRLFAKKDSMKKFWITLRKMREEGFCLDEETY LTLSKVFKKERMNSDAVALKQFYEKMIQENAIDGVVKKVVGVILEEEEQCFDKVERRLMDMKIILSDNFVIRSLKELKSQPFKALRFFHWVAKSCEGYKH TTVTYNGMARVLGRGDTIGEFWSIVEEMKNAGFEIDIDTYIKISRHFQKYKLTEEAVKLYEFMMDGPFKPSVQDCSLLLRNMSSSHKLDLTLVFRVVQKY EKSGNVLSKAVYDGMHRSFVNVGSFDEAEKIVKAMKDAGYEPDNITYSQLVFGLCKAGRLDEACKILDDMEIEGCTPDIKTWTILIQGHCDAGELGKAFV CFDTMMRKNGGPDADLVDVLMKGFVGQKRVDGAYVFLVEMINKAHVTPWQATYKLLIDSLLGESKLEESMSLLRLMKKHNYPPHAEPFVQYISKFGTVQD AADLLQALSNKQYPSLTAYRNVFESFFKEGRHSEAQDLLYKCPYHVREHQQIGQLFGSAKRGAAAATVSKNTVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10043322 [exp]	0	1
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10012112 [exp]	5.0	0.8373
AT3G02080			Ribosomal protein S19e family ...		Lus10030702 [exp]	9.3	0.8260
AT2G31610			Ribosomal protein S3 family pr...		Lus10033442 [exp]	10.7	0.8210
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10002338 [exp]	10.8	0.8262
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10035065 [exp]	10.9	0.7948
AT5G60670			Ribosomal protein L11 family p...		Lus10023186 [exp]	12.6	0.8245
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018394 [exp]	17.1	0.8144
AT5G60670			Ribosomal protein L11 family p...		Lus10026506 [exp]	18.2	0.8050
AT4G15000			Ribosomal L27e protein family ...		Lus10010461 [exp]	18.8	0.8030
AT3G06200			P-loop containing nucleoside t...		Lus10021947 [exp]	22.0	0.7913

Compare expression of checked genes

Lus10043322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.