Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15354 828 / 0 SPA3 SPA1-related 3 (.1) AT1G53090 821 / 0 SPA4 SPA1-related 4 (.1.2) AT2G46340 437 / 5e-139 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT4G11110 387 / 4e-120 SPA2 SPA1-related 2 (.1) AT2G32950 327 / 5e-101 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 170 / 2e-46 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23730 157 / 4e-42 EFO2, RUP2 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 66 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT2G32700 64 / 4e-10 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT2G47990 63 / 6e-10 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019475 [exp] 1174 / 0 AT3G15354 992 / 0.0 SPA1-related 3 (.1) Lus10019476 [exp] 659 / 0 AT3G15354 624 / 0.0 SPA1-related 3 (.1) Lus10035332 [exp] 342 / 1e-106 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029990 [exp] 341 / 2e-106 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033942 [exp] 220 / 3e-60 AT4G11110 766 / 0.0 SPA1-related 2 (.1) Lus10032358 [exp] 178 / 5e-46 AT4G11110 784 / 0.0 SPA1-related 2 (.1) Lus10027454 [exp] 146 / 2e-39 AT5G23730 248 / 2e-81 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005742 [exp] 127 / 4e-32 AT5G52250 226 / 3e-72 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029221 [exp] 65 / 1e-10 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G399600 [exp] 960 / 0 AT3G15354 1003 / 0.0 SPA1-related 3 (.1) Potri.011G119500 [exp] 926 / 0 AT3G15354 982 / 0.0 SPA1-related 3 (.1) Potri.001G094500 [exp] 436 / 2e-138 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.014G095300 [exp] 432 / 3e-137 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.003G137100 [exp] 426 / 4e-134 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.014G159300 [exp] 344 / 1e-107 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 325 / 1e-102 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 324 / 1e-100 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G140200 [exp] 174 / 7e-48 AT5G23730 427 / 3e-149 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G143200 [exp] 167 / 2e-45 AT5G23730 395 / 2e-137 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10043323 pacid=23168343 polypeptide=Lus10043323 locus=Lus10043323.g ID=Lus10043323.BGIv1.0 annot-version=v1.0 ATGAGGTGGGGTGGTGATGTTAGCTTGAGACACTGGTTGGACAAACCGGATCGTTGTGTCGATGAATACGAATGCTTCCACGTATTTTCTCAAATTGTTG ATTTTGTCAACGTAGCACATTCTCAAGGGATTGTTGTCAACAATGTCCGGCCTTCTTGCTTTTATATGTCCTCTTTCAACCATGTTTCTTTCATCGAATC TGCTTCTTGCTCCCATTCCGGGTCTGATTCATTGGAGGATGGACTTAATAATCACGATGTCAGAAATTCTTCTTCTTCTGCTTTGCTTCTTGGCCCGTCT TCCCAGCAGAAAAGTAGCATTGGTGGTGGGAGTGAAGATTTTCAACCTGTATCGACAAATGCTTTGTCCGATATTAGTTGCATACAATCAAGCTCGGCCT GTGTAACATGTGTGCCATTAGTAGAAGACAATGAAGAAGAATTGTTCTGCCCGGTTCATTCAAGGGTAGATAAGAGCAGAACCATGTCCAGTTTACGTCA TCGAGTTCTTCCCACCATGTCCAGTTTGCGTCATCGAGTTCTCCCACCCCAACTGCTGCTGAGCTGGCCAAAAGCAGCTTCATTTTGCTTATGGTTGTTG CATCCTGATCCAAGCAGTCGACCAAGTGTGAGTGATGTGTTGCAGAGCGAGTTCCTTGCTGAACGAAAGGATAAACTGGAAGAGCGTGAAGCAGCAATAC AGCTGAGAGAGAGCATAGAAGAGGAAGACCTGTTGCTCGAATTCCTGTTAGTGATACAACAGAGAAAACAGGAAGCTGCTGATAAGTTGAGAGACACTGT TTCTCTTTTATGTTCTGACATTGAAGAGATTTTGAAGCATCAAAAGTTTGAAGGGAGTATTGAAAGTACAGCCATAGATCAAATAGGGAAGGATGATCTT CTAGACTCAGAGATTCTGCCCTTGAGCACATCCAACACTGACGATGGTTTCAGCCTCGGTTCTAGAAAACGAGGCAGACCTGGCTGTCAGAATCGGGATA AAGAGGAATGTGATGATAACTTAAACGAATCTCGAAACTCAAGTATGGGGGCATCACAAATTCAAGAAAGCCAACTATTTAAGAACTCAAGGCTCATGAA GAACTTCAAGAAACTCGAAGCGGCATATCTTATGACCAGATGCAGGCCAGTTAGGCCACTTGGCAGATCGGTTATTAGACATTCCCCAGCGAGCAGTGAT GCAAGAGGTTCCGCTGTAGCAAGTGAAAGAAGTTCCATCAGTGCCTTGCAACCGAAAGATCGGCATGTTATTGGGAGACAAAGTGGATGGATAAGTCCAT TTCTTGAGGGTCTGTGCAAGTATTTATCAATGACTAATCTTAAAGTTAAGGCTGACTTGAAGCAGGGAGATTTGTTGAACTCCTCTAATCTAGTATGCTC TCTGAGTTTCGATCGAGATGGAGAATTCTTTGCCGCAGCTGGAGTAAATAAGAAAATCAAAGTGTTCGACTGCGATGCAATCATAAATGAGCACCAAGAC ATCCACTACCCTGTTGTTGAGATGGCTAGTAGGTCCAAACTCAGCAGTATATGTTGGAACAGTTATCTTAAAAGCCAAATTGCTTCAAGTAACTTTGAAG GCGTGGTGCAGGTCTGGGATGCTTCAAGAGGTCAAGTACAAACTGAATTAAGAGAACATGAGAGGCGTGTTTGGTCCATTGACTTCTCACCTGTAGATCC AACGCTTCTGGGGAGTGGGAGCGATGATGGTTCTGTTAAGCTATGGAGTATCAATCAGGCAATTCTAATTTTTGCACTTGTTGGATGTGAGCTTGAATCT AAACGTACTAATGGAGCAAGTATTGGTACCATAAAAACAAAGGCCAATGTTTGCTGCGTTCAGTTTCCCTTGGGTTCCAGTCGTTCTCTTGCATTTGGTT CCGCAGATCACAGGATTTATTATTATGATCTTCGCAACTCGAGAGCTCCTCTGTGCACATTGGTTGGCCACAGTAAAACTGTGAGTTATGTGAAGTTTCT TGATGCAACAACCATTGTTTCCGCCTCAACGGATAACACACTGAAGCTATGGGATTTGTCAGCATGCACCGCTCGAGTCAATGACACTCCACTGCACTCT TTCACGGGACACACCAACGTAAAGAATTTTGTGGGTCTATCAGTGTCTGATGGCTACATTGCTACTGGCTCAGAAACAAACGAGGTTCTGATCTACCATA GAGCCTTCCCTATGCCGGCATTGTCATACAAGTTCAACACGACAGACCCCATTTCGGGTGACGAAATGGAAGATGCGTCGCAGTTCATCTCATCGGTGTG TTGGCGAGGCCAATCCTCAACTCTTGTTGCTGCAAATTCGAGTGGAAATATCAAAATCCTGGAGATGGGTTGA
AA sequence Show only first row Show all	>Lus10043323 pacid=23168343 polypeptide=Lus10043323 locus=Lus10043323.g ID=Lus10043323.BGIv1.0 annot-version=v1.0 MRWGGDVSLRHWLDKPDRCVDEYECFHVFSQIVDFVNVAHSQGIVVNNVRPSCFYMSSFNHVSFIESASCSHSGSDSLEDGLNNHDVRNSSSSALLLGPS SQQKSSIGGGSEDFQPVSTNALSDISCIQSSSACVTCVPLVEDNEEELFCPVHSRVDKSRTMSSLRHRVLPTMSSLRHRVLPPQLLLSWPKAASFCLWLL HPDPSSRPSVSDVLQSEFLAERKDKLEEREAAIQLRESIEEEDLLLEFLLVIQQRKQEAADKLRDTVSLLCSDIEEILKHQKFEGSIESTAIDQIGKDDL LDSEILPLSTSNTDDGFSLGSRKRGRPGCQNRDKEECDDNLNESRNSSMGASQIQESQLFKNSRLMKNFKKLEAAYLMTRCRPVRPLGRSVIRHSPASSD ARGSAVASERSSISALQPKDRHVIGRQSGWISPFLEGLCKYLSMTNLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFAAAGVNKKIKVFDCDAIINEHQD IHYPVVEMASRSKLSSICWNSYLKSQIASSNFEGVVQVWDASRGQVQTELREHERRVWSIDFSPVDPTLLGSGSDDGSVKLWSINQAILIFALVGCELES KRTNGASIGTIKTKANVCCVQFPLGSSRSLAFGSADHRIYYYDLRNSRAPLCTLVGHSKTVSYVKFLDATTIVSASTDNTLKLWDLSACTARVNDTPLHS FTGHTNVKNFVGLSVSDGYIATGSETNEVLIYHRAFPMPALSYKFNTTDPISGDEMEDASQFISSVCWRGQSSTLVAANSSGNIKILEMG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	0	1
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	1.0	0.9729
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019475 [exp]	2.0	0.9559
AT5G08720			unknown protein		Lus10035962 [exp]	3.0	0.9552
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	3.2	0.9414
AT5G08720			unknown protein		Lus10025701 [exp]	3.5	0.9503
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10016195 [exp]	4.9	0.9193
AT5G51290			Diacylglycerol kinase family p...		Lus10016714 [exp]	5.8	0.8974
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10029118 [exp]	6.5	0.9087
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10020553 [exp]	6.5	0.9406
AT5G04900		NOL	NYC1-like (.1)		Lus10033408 [exp]	7.4	0.9214

Compare expression of checked genes

Lus10043323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.