Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15350 634 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G27480 627 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G53100 554 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G15050 474 / 2e-166 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 456 / 4e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G03340 440 / 8e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 439 / 1e-152 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 389 / 7e-134 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 370 / 5e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G37585 363 / 2e-123 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019477 [exp] 843 / 0 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10014495 [exp] 491 / 4e-173 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 487 / 2e-171 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030084 [exp] 454 / 3e-158 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 452 / 8e-158 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10033714 [exp] 435 / 4e-151 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031626 [exp] 426 / 3e-147 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10020316 [exp] 403 / 2e-138 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025339 [exp] 396 / 6e-136 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G119600 [exp] 716 / 0 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G399500 [exp] 706 / 0 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.017G075600 [exp] 495 / 6e-175 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 481 / 3e-169 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 449 / 1e-156 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.009G003300 [exp] 449 / 1e-156 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.019G104600 [exp] 436 / 2e-151 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G066200 [exp] 421 / 3e-146 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 399 / 1e-136 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 367 / 6e-125 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10043324 pacid=23167979 polypeptide=Lus10043324 locus=Lus10043324.g ID=Lus10043324.BGIv1.0 annot-version=v1.0 ATGGGGTCTCTGAACATGGAGAAGAAGTGGGTTTTCCCTCTGGTCATAAGCTCTCTCATCTGTGTCTTCCTGTTAGCAACTTCCTTCAACATGGGTCTCA TCTCTTCACTCCACACCATCAATCACATCTTCAACATTTTCCCATCTCGTTTAAACCAAACGGGCCAAGGTTTTGCTGAATCAAAGGTCTCGCAGTCTCC TCCTCCTCCTCCGCCCGGTCCAAAAATTCCCAGGTTCGCTTACTTGGTATCTGGATCAAAAGGTGACCTGGAAAAGCTTTGGAGGACGCTTCACGCCCTT TACCATCCAAGAAACCACTATGTCGTTCATCTTGACCTTGAGTCCCCGGCAGAGGAGAGGTTAGAGCTTGCTTCAAGGGTTGAGAAGCACCCAATTTTCT CCAAGTTTGGGAATGTTTACATGAATTCCAAAGCTAATATGGTGACCTATAGAGGACCCACTATGGTCTCCAATACACTTCATGCCTGTGCAATTCTTCT GAAGAAGAGTAAAGATTGGGATTGGTTTGTCAACCTCAGTGCTTCTGATTATCCTCTTGTAACCCAAGATGATCTTCTTGACACGTTCTCAACTTTGAAC CGAAATCTAAACTTTATTGAGCATACTAGTCAGTTAGGATGGAAAGAGGACAAGAGAGCAATGCCGCTGATTGTGGATCCTGGACTCTACTCTACCACTA AAGAAGACATTTTTCCAGCTAATCCCAAGAGATCTCTCCCAACAGCATTCAAGCTGTTCACAGGTTCTGCATGGATGGTTCTTACCCGTCCATTTATCGA GTACTTAATTTGGGGTTGGGATAACCTACCAAGAACGCTGCTCATGTATTACGCCAACTTCGTGTCCTCCCCTGAAGGTTATTTCCACACTGTAATATGC AATGCACCGGAATTTGCCCGTACAGCTATCAACCATGACTTGCATTACATTGCTTGGGATGTCCCTCCGAGGCAGCATCCGCATATTCTGACGCTTAACG ATACCGAAAAGATGATCGCAAGCGGTGCTGCCTTTGCTAGAAAGTTCCGTCAGGACGATCCTGCGCTAGAAAAGATCGATAATGAGTTGCTTGGGAGGAA GGTTGGGGCATTCACTCCTGGAGGGTGGTGCTCCAATAGCCCAAACTGTACCGAGGTTGGGGACTTGAACAGCATCAAGCCTGGTCCAGGTGCTGACAGG CTTAAACATCTCATAGCTAGGGTTGCTTTGATGGCAAAGCGTCAAGAAAATCAGTGTAAATAG
AA sequence Show only first row Show all	>Lus10043324 pacid=23167979 polypeptide=Lus10043324 locus=Lus10043324.g ID=Lus10043324.BGIv1.0 annot-version=v1.0 MGSLNMEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINHIFNIFPSRLNQTGQGFAESKVSQSPPPPPPGPKIPRFAYLVSGSKGDLEKLWRTLHAL YHPRNHYVVHLDLESPAEERLELASRVEKHPIFSKFGNVYMNSKANMVTYRGPTMVSNTLHACAILLKKSKDWDWFVNLSASDYPLVTQDDLLDTFSTLN RNLNFIEHTSQLGWKEDKRAMPLIVDPGLYSTTKEDIFPANPKRSLPTAFKLFTGSAWMVLTRPFIEYLIWGWDNLPRTLLMYYANFVSSPEGYFHTVIC NAPEFARTAINHDLHYIAWDVPPRQHPHILTLNDTEKMIASGAAFARKFRQDDPALEKIDNELLGRKVGAFTPGGWCSNSPNCTEVGDLNSIKPGPGADR LKHLIARVALMAKRQENQCK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	0	1
AT1G02180			ferredoxin-related (.1)		Lus10038068 [exp]	1.4	0.9341
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10019365 [exp]	2.2	0.9284
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	2.4	0.9366
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	3.5	0.9211
AT3G03210			unknown protein		Lus10031359 [exp]	3.5	0.9301
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10025834 [exp]	3.7	0.9017
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	6.0	0.8982
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10019477 [exp]	6.5	0.9174
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10015370 [exp]	6.6	0.9109
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10034651 [exp]	7.1	0.9132

Compare expression of checked genes

Lus10043324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.