Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14870 187 / 4e-61 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT5G35525 176 / 6e-57 PLAC8 family protein (.1) AT1G14880 160 / 1e-50 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT1G49030 157 / 2e-48 PLAC8 family protein (.1) AT1G68610 146 / 5e-45 PCR11 PLANT CADMIUM RESISTANCE 11 (.1) AT3G18460 139 / 5e-42 PLAC8 family protein (.1) AT3G18470 137 / 6e-42 PLAC8 family protein (.1) AT3G18450 122 / 3e-35 PLAC8 family protein (.1) AT1G58320 112 / 1e-31 PLAC8 family protein (.1) AT1G68630 109 / 2e-30 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019478 [exp] 388 / 6e-140 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10021696 [exp] 174 / 3e-55 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1) Lus10034298 [exp] 162 / 9e-51 AT1G14870 160 / 7e-51 PLANT CADMIUM RESISTANCE 2 (.1) Lus10041474 [exp] 112 / 1e-31 AT1G14870 112 / 3e-32 PLANT CADMIUM RESISTANCE 2 (.1) Lus10004063 [exp] 103 / 3e-28 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10009036 [exp] 101 / 1e-27 AT1G68630 122 / 2e-36 PLAC8 family protein (.1) Lus10008890 [exp] 94 / 2e-24 AT1G68630 119 / 6e-35 PLAC8 family protein (.1) Lus10004064 [exp] 87 / 4e-20 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1) Lus10035039 [exp] 71 / 5e-16 AT5G35525 78 / 2e-19 PLAC8 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G132900 [exp] 264 / 5e-91 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108800 [exp] 259 / 5e-89 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127700 [exp] 190 / 1e-61 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1) Potri.008G132775 [exp] 176 / 2e-56 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132850 [exp] 176 / 4e-56 AT1G14870 184 / 6e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 163 / 2e-51 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 158 / 4e-49 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 158 / 5e-49 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.012G092200 [exp] 148 / 1e-45 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.012G060900 [exp] 149 / 1e-43 AT1G49030 199 / 2e-62 PLAC8 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10043325 pacid=23167934 polypeptide=Lus10043325 locus=Lus10043325.g ID=Lus10043325.BGIv1.0 annot-version=v1.0 ATGCACTCCTCCGCCCCAAATTCATACGAGAAGTTCAACGCGGAGGTAAGCCCTCCGCCGCCGTTGTACAAGGATTCCACAACCTTGGTTACGGAGAGCA CCACCGGTAGCCAGTTCTACAGCAGCAATTCTTATGCTGAATCCGTGGATAAGGTTGACTGGTCTTCCGGACTCTGCGATTGTTTCTCAGATTTCCGTAA CTGCTGTTTAACTTTCTGGTGCCCATGCGTCACTTTCGGCCAGATCGCGGAGATTGTGGATATGGGATCATCTTCTTGTGGTGTGAATGGAGCACTCTAC ACTCTAATTGCATGTGTGACTGGTTTCCCTTGTTGCTACTCTTGTTTCTACCGCACCAAACTGAGGCAGCAGTACGGTCTCAAAGGCACCCACTCTCTGG ATTGCTTAGTTCACTGCTTCTGCGAGTATTGTTCCTTGTGTCAGGAGTACCGGGAGCTTAAGAAAAACGGATTTGATTTGTCCATTGGATGGCATGGGAA TGTAGAGCGGAAGAATCGTAATTTGGAGATGGCTTCCTTGCCACCAGCAGTTGAAAGAGGCATGACCCGGTAG
AA sequence Show only first row Show all	>Lus10043325 pacid=23167934 polypeptide=Lus10043325 locus=Lus10043325.g ID=Lus10043325.BGIv1.0 annot-version=v1.0 MHSSAPNSYEKFNAEVSPPPPLYKDSTTLVTESTTGSQFYSSNSYAESVDKVDWSSGLCDCFSDFRNCCLTFWCPCVTFGQIAEIVDMGSSSCGVNGALY TLIACVTGFPCCYSCFYRTKLRQQYGLKGTHSLDCLVHCFCEYCSLCQEYRELKKNGFDLSIGWHGNVERKNRNLEMASLPPAVERGMTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10043325 [exp]	0	1
AT1G07940			GTP binding Elongation factor ...		Lus10023497 [exp]	1.7	0.8919
AT5G41350			RING/U-box superfamily protein...		Lus10024635 [exp]	2.0	0.8848
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	2.0	0.9103
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	2.0	0.9105
AT5G01750			Protein of unknown function (D...		Lus10002477 [exp]	5.7	0.8757
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	5.9	0.8829
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	6.0	0.8792
AT1G55915			zinc ion binding (.1)		Lus10037337 [exp]	6.0	0.8532
AT5G17165			unknown protein		Lus10002135 [exp]	7.4	0.8700
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	7.9	0.8774

Compare expression of checked genes

Lus10043325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.