Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27440 702 / 0 ATGUT1, IRX10, GUT2 Exostosin family protein (.1) AT5G61840 687 / 0 GUT1, IRX10-L Exostosin family protein (.1) AT5G22940 295 / 1e-95 F8H FRA8 homolog (.1) AT2G28110 286 / 8e-93 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) AT5G03795 130 / 3e-33 Exostosin family protein (.1) AT5G37000 121 / 5e-30 Exostosin family protein (.1) AT4G38040 119 / 9e-30 Exostosin family protein (.1) AT5G11130 119 / 3e-29 Exostosin family protein (.1) AT4G32790 117 / 2e-28 Exostosin family protein (.1) AT4G16745 116 / 3e-28 Exostosin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019479 [exp] 792 / 0 AT1G27440 731 / 0.0 Exostosin family protein (.1) Lus10043209 [exp] 688 / 0 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10032530 [exp] 687 / 0 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10041343 [exp] 275 / 3e-88 AT2G28110 608 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10037376 [exp] 229 / 9e-71 AT2G28110 501 / 5e-177 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10013790 [exp] 129 / 1e-32 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 129 / 2e-32 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10001917 [exp] 125 / 2e-31 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10001958 [exp] 120 / 4e-31 AT5G25310 372 / 1e-127 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G068100 [exp] 715 / 0 AT1G27440 752 / 0.0 Exostosin family protein (.1) Potri.012G109200 [exp] 697 / 0 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.012G109600 [exp] 695 / 0 AT5G61840 750 / 0.0 Exostosin family protein (.1) Potri.003G162000 [exp] 686 / 0 AT1G27440 705 / 0.0 Exostosin family protein (.1) Potri.015G116700 [exp] 598 / 0 AT5G61840 619 / 0.0 Exostosin family protein (.1) Potri.009G006500 [exp] 296 / 2e-96 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Potri.015G107200 [exp] 282 / 1e-94 AT5G61840 327 / 3e-112 Exostosin family protein (.1) Potri.T124607 [exp] 135 / 4e-35 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 133 / 2e-34 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.018G025200 [exp] 131 / 7e-34 AT5G11130 530 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10043326 pacid=23167983 polypeptide=Lus10043326 locus=Lus10043326.g ID=Lus10043326.BGIv1.0 annot-version=v1.0 ATGACGACCTTACTGCTACTCCTCGTTGTTTCCCTCTCCACCATTGTCATCAATGCCGATCCCAGGCTACGGACCGAGAGGATTTCAGGCAGTGCTGGAG ATGTGCTGGACGACAATCCAGTCGGAAGGCTGAAAGTATACGTGTACGAGCTCCCAAGCAAGTACAACAAAAAGCTACTTCAAAAAGACCCACGTTGCTC GACTCATATGTTCGCCGCTGAGATATTCATGCACAGGTTTCTCCTCTCCAGCCCGGTCCGAACCCTCGACCCGAACGAGGCGGACTGGTTCTACACTCCG ATCTACGTTACCTGCGACCTCACCCCTACCGGCCTACCTCTGCCCTTCAAATCTCCTCGGATGATGCGAAGCGCCATCCAGCTCGTCTCCTCCAAATGGC CTTACTGGAATAGAACTGAAGGCGCTGACCATTTCTTCGTGGTGCCTCATGATTTCGGTGCTTGTTTCCACTACCAGGAGGAGATTGCCATTAAGAGAGG GATTCTAGCATTGCTTGGTAGAGCCACTCTTGTTCAGACGTTTGGGCAGAGGAATCATGTGTGCTTGAAAGATGGTTCCATCACCATTCCTCCTTATGCT CCCCCGCAGAAAATGCAGGCTAGGCACATTCCGCCGGAGACTCCTCGTTCCATCTTTGTCTACTTCCGAGGACTCTTCTACGATGTCAACAACGACCCTG AAGGCGGCTACTACGCTAGGGGAGCCAGAGCAGCAGTATGGGAGAACTTCAAGAACAATCCACTCTTCGACATCTCCACCGACCATCCGACAACATACTA CGAAGACATGCAGAGATCCATATTTTGCCTATGCCCGCTGGGTTGGGCTCCGTGGAGTCCCAGGCTGGTGGAGGCCGTGGTGTTCGGTTGCATCCCTGTA ATCATAGCAGACGACATCGTTCTGCCGTTCGCGGACGCGATCCCGTGGGAGGAGATAGGGGTGTTCGTGGAGGAGGAGAAGGTGCCCAACTTGGACACCA TCCTGACGTCCATTCCGCCGGAAGTGATATTGAGGAAGCAAAGGCTGCTGGCGAATCCGTCGATGAAGAGGGCGATGTTGTTCCCTCAACCCGCCCAAGC AGGGGATGCGTTTCACCAGATACTCAATGGCTTGGCGAGGAAGTTGCCGCATGATAGGAGCAAGGTGTTCTTGAGTCCCGGACAGAAGGTGCTCAATTGG ACGTCTGGCCCTCCAGGAGATATGAAACCTTGGTGA
AA sequence Show only first row Show all	>Lus10043326 pacid=23167983 polypeptide=Lus10043326 locus=Lus10043326.g ID=Lus10043326.BGIv1.0 annot-version=v1.0 MTTLLLLLVVSLSTIVINADPRLRTERISGSAGDVLDDNPVGRLKVYVYELPSKYNKKLLQKDPRCSTHMFAAEIFMHRFLLSSPVRTLDPNEADWFYTP IYVTCDLTPTGLPLPFKSPRMMRSAIQLVSSKWPYWNRTEGADHFFVVPHDFGACFHYQEEIAIKRGILALLGRATLVQTFGQRNHVCLKDGSITIPPYA PPQKMQARHIPPETPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDISTDHPTTYYEDMQRSIFCLCPLGWAPWSPRLVEAVVFGCIPV IIADDIVLPFADAIPWEEIGVFVEEEKVPNLDTILTSIPPEVILRKQRLLANPSMKRAMLFPQPAQAGDAFHQILNGLARKLPHDRSKVFLSPGQKVLNW TSGPPGDMKPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10043326 [exp]	0	1
AT2G41610			unknown protein		Lus10030172 [exp]	1.0	0.9908
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10019479 [exp]	2.8	0.9900
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	3.0	0.9876
AT3G51325			RING/U-box superfamily protein...		Lus10040617 [exp]	4.2	0.9825
AT4G08850			Leucine-rich repeat receptor-l...		Lus10008229 [exp]	4.2	0.9748
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	4.5	0.9840
AT3G52480			unknown protein		Lus10004203 [exp]	7.1	0.9749
					Lus10011724 [exp]	8.0	0.9808
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	8.1	0.9825
AT3G52480			unknown protein		Lus10029407 [exp]	8.8	0.9654

Compare expression of checked genes

Lus10043326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.